Table 5.
k | Recall | Precision | F-measure | |
LSI/SVD | 2 | 0.5455 | 0.6000 | 0.5714 |
3* | 0.9091 | 1.0000 | 0.9524 | |
4 | 0.9091 | 1.0000 | 0.9524 | |
5 | 0.8182 | 0.9000 | 0.8571 | |
6 | 0.8182 | 0.9000 | 0.8571 | |
10 | 0.7273 | 0.8000 | 0.7619 | |
20 | 0.8182 | 0.9000 | 0.8571 | |
30 | 0.8182 | 0.9000 | 0.8571 | |
40 | 0.8182 | 0.9000 | 0.8571 | |
50 | 0.8182 | 0.9000 | 0.8571 | |
GR/NMF | 2 | 0.4545 | 0.5000 | 0.4762 |
3* | 0.9091 | 1.0000 | 0.9524 | |
4 | 0.9091 | 1.0000 | 0.9524 | |
5 | 0.9091 | 1.0000 | 0.9524 | |
6 | 0.8182 | 0.9000 | 0.8571 | |
10 | 0.8182 | 0.9000 | 0.8571 | |
20 | 0.7273 | 0.8000 | 0.7619 |
*The reduced dimension k obtained from the k-selection scheme using only known genes associated with this pathway.