TABLE 2.
Correlations of linkage disequilibrium (measured by r) between pairs of lines for markers within 500 kb (above diagonal) and for nonsyntenic markers (below diagonal)
| Line | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 |
|---|---|---|---|---|---|---|---|---|---|
| 1 | — | 0.21 (68)a | 0.41 (80) | 0.45 (133) | 0.47 (112) | 0.52 (89) | 0.94 (200) | 0.56 (107) | 0.46 (127) |
| 2 | 0.00 | — | 0.39 (163) | 0.69 (356) | 0.36 (241) | 0.45 (206) | 0.41 (144) | 0.47 (157) | 0.66 (315) |
| 3 | −0.00 | 0.01 | — | 0.37 (217) | 0.38 (208) | 0.64 (217) | 0.48 (146) | 0.90 (278) | 0.41 (197) |
| 4 | −0.01 | 0.02 | 0.03 | — | 0.40 (374) | 0.46 (308) | 0.32 (238) | 0.53 (249) | 0.76 (504) |
| 5 | −0.00 | 0.01 | −0.02 | −0.01 | — | 0.38 (278) | 0.39 (219) | 0.44 (227) | 0.41 (339) |
| 6 | −0.01 | −0.00 | −0.01 | 0.00 | −0.00 | — | 0.48 (176) | 0.70 (223) | 0.46 (243) |
| 7 | −0.02 | −0.01 | 0.01 | −0.00 | −0.00 | −0.01 | — | 0.51 (141) | 0.46 (226) |
| 8 | −0.01 | −0.02 | 0.00 | 0.00 | −0.01 | 0.00 | −0.00 | — | 0.54 (210) |
| 9 | 0.01 | 0.00 | 0.03 | 0.01 | −0.00 | −0.00 | −0.00 | 0.02 | — |
Only markers with major allele frequencies >0.2 were included.
a
Number of marker pairs included in computation of the correlation. Correlations for nonsyntenic markers were based on >13,000 marker pairs.