Table 2.
Transcripts (TFR pool) related to phytohormone biosynthesis and response categorized by the first hit in the MIPS2 catalog
| Probeset ID | GenBank Annotation | VvGI5 | UniProt ID | Gene Name Description | Function | Profile | Fold Change |
| 1608022_at | BQ798105 | TC57089 | Q5SGD1 | 9-cis-epoxycarotenoid dioxygenase 1 | ABA biosynthesis | 15 | 6.46 |
| 1607029_at | CD716868 | TC55541 | Q8LP14 | 9-cis-epoxycarotenoid dioxygenase 4 | ABA biosynthesis | 15 | 3.85 |
| 1617541_s_at | CB342503 | TC54423 | O49814 | β-carotene hydroxylase 2 | ABA biosynthesis | 3 | 3.25 |
| 1618171_s_at | BQ792407 | TC55939 | Q5SGC9 | Zeaxanthin epoxidase | ABA metabolism | 3 | 2.36 |
| 1614788_at | BQ792954 | TC54112 | Q3ZNL4 | Dehydrin 1a | ABA response | 11 | 26.63 |
| 1609063_at | BQ799245 | TC63341 | Q4VT47 | RD-22 (ABA regulated) | ABA response | 3 | 11.28 |
| 1621346_at | CB978597 | TC65114 | O48620 | ABI3 (ABA regulated) | ABA response | 14 | 7.57 |
| 1614892_at | CF511230 | TC54474 | O82468 | Phosphatase 2C (ABA regulated) | ABA response | 11 | 5.87 |
| 1615970_at | CF405892 | TC65344 | Q7XAV5 | Dehydration responsive element binding protein | ABA response | 15 | 4.53 |
| 1616735_at | CF604749 | TC51916 | O82176 | Phosphate-induced protein (ABA regulated) | ABA response | 16 | 3.44 |
| 1607955_at | CB978189 | TC63879 | Q9ZST5 | PII protein (ABA regulated) | ABA response | 12 | 3.07 |
| 1621396_at | CF514715 | TC51970 | Q94IB2 | Phi-2 (ABA regulated) | ABA response | 16 | 2.9 |
| 1617417_s_at | CD798528 | TC61938 | Q9M3V0 | Phosphatase 2C (ABA regulated) | ABA response | 5 | 2.77 |
| 1617791_s_at | CB004910 | TC70554 | Q45W74 | Dehydration-induced protein (ABA regulated) | ABA response | 4 | 2.55 |
| 1609665_a_at | CB005515 | TC58443 | Q9M9W9 | Phosphatase-2C (ABA regulated) | ABA response | 20 | 2.25 |
| 1609419_at | CB982969 | CB982969 | Q9S7V4 | Abscisic acid-induced protein | ABA response | 15 | 2.23 |
| 1610937_at | BQ792881 | TC65459 | Q67WL5 | Abscisic acid-induced protein | ABA response | 18 | 2.2 |
| 1611714_at | BQ794807 | TC53528 | Q06009 | Phosphatase 2A (ABA regulated) | ABA response | 3 | 2.12 |
| 1616882_at | CD799018 | TC53254 | Q7Y0S8 | Phi-1 (ABA regulated) | ABA response | 3 | 2.1 |
| 1621041_at | BQ794656 | TC56829 | Q9FIE3 | Vernalization-insensitive protein 3 (ABA regulated) | ABA response | 21 | 2.08 |
| 1619261_s_at | CB982969 | TC68788 | Q5XWP1 | Abscisic acid-induced protein | ABA response | 21 | 2.05 |
| 1619272_at | CF373376 | TC51939 | Q94AL8 | Cold acclimation protein (ABA regulated) | ABA response | 3 | 2.02 |
| 1619610_at | CB008850 | TC56575 | Q84XG9 | IAA-amino acid hydrolase | Auxin metabolism | 11 | 5.86 |
| 1615645_at | CB969433 | TC62316 | Q8LCI6 | IAA-amino acid hydrolase | Auxin metabolism | 3 | 3.19 |
| 1606566_at | CF211641 | TC62299 | Q681Q1 | Auxin-induced protein | Auxin response | 2 | 12.05 |
| 1609591_at | CD799271 | TC63193 | O23089 | Auxin-regulated protein | Auxin response | 11 | 11.74 |
| 1614851_s_at | CB973279 | TC62879 | Q1RY17 | Auxin responsive Factor | Auxin response | 3 | 11 |
| 1620662_at | CB981820 | TC59676 | Q6QUQ3 | Auxin and ethylene responsive GH3 | Auxin response | 11 | 10.17 |
| 1614098_at | CF608417 | TC57853 | Q9FEL8 | AUX1 like protein (influx carrier) | Auxin response | 2 | 8.8 |
| 1606509_at | CB971327 | TC52521 | Q7XEJ9 | Auxin induced protein | Auxin response | 3 | 8.29 |
| 1616225_at | CB972698 | TC52772 | Q9C5W9 | Auxin response factor 2 | Auxin response | 1 | 7.3 |
| 1612060_at | CB346335 | TC53973 | Q76DT1 | AUX1 like protein (influx carrier) | Auxin response | 7 | 6.96 |
| 1616104_at | CB004955 | TC55019 | O65695 | Auxin-regulated protein | Auxin response | 15 | 6.11 |
| 1612001_s_at | CF604676 | TC69850 | Q9XEY0 | Nt-gh3 (auxin and ethylene) | Auxin response | 2 | 4.69 |
| 1617163_at | BQ800616 | TC56821 | Q9SHL8 | Auxin efflux carrier | Auxin response | 3 | 4.23 |
| 1617513_at | CF203551 | TC52262 | Q8LAL2 | Auxin-responsive protein IAA26 | Auxin response | 2 | 3.94 |
| 1613054_at | BQ794856 | TC53877 | O65695 | Auxin regulated factor | Auxin response | 3 | 3.79 |
| 1621946_at | CB975415 | TC70724 | Q8H0E0 | PIN1 like auxin transport | Auxin response | 7 | 3.7 |
| 1616015_at | CF607669 | TC67186 | Q2LAJ4 | Auxin response factor | Auxin response | 7 | 3.69 |
| 1611491_at | CB900901 | TC57901 | Q769J4 | AtPIN3 (auxin efflux carrier) | Auxin response | 20 | 3.5 |
| 1612180_at | CF608682 | TC66988 | Q6L8T9 | Auxin responsive factor 5 | Auxin response | 7 | 3.49 |
| 1614660_at | CF207466 | TC53887 | P13088 | Auxin-induced protein AUX22 | Auxin response | 11 | 3.04 |
| 1617179_at | CF414958 | - | Q6YZX7 | Auxin efflux carrier | Auxin response | 21 | 2.91 |
| 1615728_at | AY082522 | TC60981 | Q84V38 | CsIAA3 (Auxin regulated) | Auxin response | 7 | 2.66 |
| 1610034_at | CB97302 | TC59892 | Q49RB8 | Auxin receptor | Auxin response | 10 | 2.45 |
| 1617097_at | BQ797969 | TC67796 | Q8LER0 | Auxin efflux carrier | Auxin response | 3 | 2.41 |
| 1613857_at | CD715051 | TC55162 | O24408 | Auxin responsive factor | Auxin response | 2 | 2.32 |
| 1607503_s_at | CF515267 | TC53837 | Q52QX4 | Auxin-repressed protein | Auxin response | 12 | 2.3 |
| 1619658_at | CF371851 | TC66647 | Q6QUQ3 | Auxin and ethylene responsive GH3 | Auxin response | 15 | 2.25 |
| 1610591_at | CB923320 | TC57860 | Q3LFT5 | Auxin regulated protein | Auxin response | 10 | 2.21 |
| 1620726_at | CB339504 | TC56077 | Q6YZJ0 | Auxin-regulated protein | Auxin response | 3 | 2.19 |
| 1617694_at | CB972462 | TC62076 | Q93XP5 | Auxin responsive factor | Auxin response | 2 | 2.18 |
| 1618394_at | CF371644 | CF371644 | Q949J8 | Auxin growth promoter protein | Auxin response | 2 | 2.1 |
| 1617572_at | CB918599 | TC66046 | Q9XF92 | BRH1 RING finger protein (Brassinosteroid regulated) | Brassinosteroid response | 21 | 3.53 |
| 1620306_at | CF404552 | TC69712 | Q5ZAY9 | Cytokinin oxidase | Cytokinin response | 3 | 57.36 |
| 1610071_at | BQ797708 | TC58750 | Q39802 | Cytokinin induced message | Cytokinin response | 11 | 13.16 |
| 1619945_at | CB345883 | TC61250 | Q84N27 | Cytokinin repressed protein | Cytokinin response | 19 | 3.05 |
| 1622308_at | CF210289 | TC63310 | Q8S933 | 1-aminocyclopropane-1-carboxylate synthase | Ethylene biosynthesis | 2 | 11.84 |
| 1615952_s_at | CF215641 | TC56709 | Q84X67 | 1-aminocyclopropane-1-carboxylic acid oxidase | Ethylene biosynthesis | 3 | 6.56 |
| 1609683_at | CF604955 | TC65735 | Q5U8L6 | Ethylene responsive factor 2 | Ethylene response | 12 | 22.64 |
| 1617012_at | CD802399 | TC68057 | P16146 | Ethylene-responsive element | Ethylene response | 11 | 14.05 |
| 1621552_at | BM437510 | TC66829 | Q9LV58 | Ethylene-responsive transcriptional co activator | Ethylene response | 21 | 9.08 |
| 1619585_at | CD800299 | TC62897 | Q75UJ4 | Ethylene responsive factor | Ethylene response | 13 | 4.21 |
| 1611910_s_at | AY395745 | TC63214 | Q6TKQ3 | Ethylene responsive factor 4 | Ethylene response | 3 | 4.13 |
| 1609990_at | CB009298 | TC63214 | Q6TKQ3 | Ethylene responsive factor 2 | Ethylene response | 3 | 4.12 |
| 1608511_at | CB342877 | TC62587 | Q6RZW7 | Ethylene responsive factor 5 | Ethylene response | 15 | 3.72 |
| 1609780_at | CA810742 | TC55438 | Q94E74 | Ethylene responsive factor 6 | Ethylene response | 3 | 3.22 |
| 1612699_at | BQ798614 | BQ798614 | Q9XIA5 | Ethylene-forming-enzyme-like dioxygenase | Ethylene response | 12 | 2.75 |
| 1619178_at | CB349106 | TC54200 | Q94E74 | Ethylene responsive 6 | Ethylene response | 19 | 2.62 |
| 1613799_at | CF517211 | TC55673 | Q6RZW8 | Ethylene responsive factor 4 | Ethylene response | 21 | 2.5 |
| 1622402_at | CD799344 | TC62349 | Q84PH6 | Ethylene receptor (EIN4) | Ethylene response | 20 | 2.4 |
| 1609559_at | CF215263 | TC58568 | Q94AW5 | Ethylene-responsive element | Ethylene response | 21 | 2.34 |
| 1606623_at | BQ797592 | TC70037 | Q9LVS8 | EREBP-4 | Ethylene response | 3 | 2.28 |
| 1612921_at | CF514773 | TC57403 | Q9LVS8 | EREBP-4 | Ethylene response | 3 | 2.26 |
| 1618213_at | CF203873 | CF203873 | Q9SWV2 | ER6 (Ethylene regulated) | Ethylene response | 3 | 2.16 |
| 1611657_at | CF208861 | TC67832 | O64588 | GH3 Root formation (gibberellin regulated) | GA response | 3 | 8.07 |
| 1610607_at | CF371650 | TC66111 | Q49RB3 | GASA | GA response | 3 | 6.98 |
| 1621228_at | BQ798029 | TC52322 | Q6S5L6 | GAI protein (Gibberellin regulated) | GA response | 7 | 2.52 |
| 1610610_at | CA810332 | TC66284 | Q9ZQA5 | Putative gibberellin β-hydroxylase | Gibberellin metabolism | 10 | 3.52 |
| 1620071_at | BQ800214 | TC56624 | Q9LYC1 | Gibberellin receptor | Gibberellin response | 11 | 5.3 |
| 1618181_at | CF512673 | TC67464 | Q9MAA7 | Gibberellin receptor 2 | Gibberellin response | 16 | 2.1 |
| 1622456_at | CF609276 | TC66424 | Q7PCB5 | Phytosulfokine | Growth factor | 3 | 9.3 |
| 1616312_at | CD720049 | TC61028 | Q7PCA0 | Phytosulfokine peptide precursor | Growth factor | 12 | 3.69 |
| 1607170_s_at | CB917184 | TC66717 | Q7PCA1 | Phytosulfokine | Growth factor | 21 | 2.07 |
| 1612021_at | CF213898 | CF213898 | Q7EYF8 | Phytosulfokine receptor | Growth factor response | 3 | 4.06 |
| 1607601_at | CF209956 | TC61395 | Q76DL0 | 12-oxophytodienoate reductase | JA metabolism | 2 | 4.2 |
| 1619407_s_at | CA809049 | TC67104 | Q76DL0 | 12-oxophytodienoate reductase | JA metabolism | 21 | 2.92 |
| 1620308_at | CF208037 | TC57918 | Q38944 | Steroid 5-alpha-reductase | Lipid, fatty acid and isoprenoid metabolism | 3 | 3.5 |
| 1613941_at | CA818531 | TC61611 | Q7X9G5 | Lipoxygenase | Lipid, fatty acid and isoprenoid metabolism | 1 | 2.99 |
| 1618940_at | CF212858 | TC64939 | Q8W250 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Lipid, fatty acid and isoprenoid metabolism | 3 | 2.03 |
| 1613678_at | CB971023 | TC54495 | Q9M2G7 | Phosphatase | Phosphate metabolism | 3 | 2.07 |
| 1612552_at | CA818350 | CA818350 | Q9C9W8 | S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase | SA response | 11 | 6.99 |
| 1618457_at | CF205125 | CF205125 | Q9M6E7 | UDP-glucose:salicylic acid glucosyltransferase | SA response | 12 | 2.19 |
| 1619377_at | CF372632 | TC68498 | Q5Z825 | avrRpt2-induced AIG2 protein | SA response | 12 | 2.06 |