Table 7.
Transcripts (TFR pool) related to Energy metabolism within specific sub-sections
| Probeset ID | GenBank Annotation | VvGI5 | Uniprot ID | Gene Name Description | Function | Profile | Fold Change |
| 1612882_at | CD720949 | TC64621 | A5BS41 | ATP-dependent transmembrane transporter | ATP binding | 2 | 5.55 |
| 1612645_at | CB344170 | TC55708 | P32980 | ATP synthase | ATP binding | 3 | 3.59 |
| 1616533_at | CB339497 | TC62259 | P31853 | ATP synthase B' chain | ATP binding | 12 | 2.88 |
| 1618182_at | CF604629 | TC63054 | P19023 | ATP synthase beta chain | ATP binding | 21 | 2.23 |
| 1607759_at | CD798264 | TC67523 | Q43433 | Vacuolar ATP synthase subunit B isoform 2 | ATP binding | 11 | 2.16 |
| 1620500_at | CB349662 | CB349662 | Q67IU5 | Ribulose 1,5-bisphosphate carboxylase small subunit | Carbon dioxide fixation | 3 | 19.73 |
| 1613936_x_at | CF568996 | CF568996 | O22077 | Ribulose bisphosphate carboxylase small chain | Carbon dioxide fixation | 3 | 2.36 |
| 1616918_s_at | CB345541 | TC56391 | Q40281 | Rubisco activase | Carbon dioxide fixation | 3 | 2.22 |
| 1619681_at | CD799678 | TC70996 | Q9C5C7 | Rubisco expression protein | Carbon dioxide fixation | 11 | 2.18 |
| 1612848_x_at | CF202280 | CF202280 | P10795 | Ribulose bisphosphate carboxylase | Carbon dioxide fixation | 3 | 2.13 |
| 1620551_s_at | CB339855 | TC56836 | O98997 | Rubisco activase | Carbon dioxide fixation | 3 | 2.13 |
| 1610491_at | CD010750 | TC57419 | Q8LF17 | Ribulose-1,5-bisphosphate carboxylase/oxygenase | Carbon dioxide fixation | 12 | 2.13 |
| 1616847_s_at | CA816751 | TC68454 | O22077 | Ribulose bisphosphate carboxylase small chain | Carbon dioxide fixation | 3 | 2.12 |
| 1616435_at | CB974220 | TC68219 | P08927 | RuBisCO subunit binding-protein beta subunit | Carbon dioxide fixation | 3 | 2.1 |
| 1622299_s_at | CK136935 | CK136935 | Q9LKH8 | NADPH-protochlorophyllide oxidoreductase | Chlorophyll biosynthesis | 3 | 5.3 |
| 1619717_at | CF210684 | TC59048 | Q9SDT1 | NADPH:protochlorophyllide oxidoreductase | Chlorophyll biosynthesis | 3 | 4.79 |
| 1606624_at | CF606923 | TC64589 | Q43082 | Porphobilinogen deaminase | Chlorophyll biosynthetic process | 1 | 2.5 |
| 1617935_at | CB974545 | TC68056 | Q7YJS8 | NADH dehydrogenase 49kDa subunit | Complex 1 | 16 | 5.55 |
| 1611418_at | CB342953 | TC56161 | Q7YJ08 | NAD(P)H-quinone oxidoreductase | Complex 1 | 14 | 5.09 |
| 1609373_at | CD800734 | TC60468 | Q6KGY1 | NADH dehydrogenase | Complex 1 | 14 | 3.05 |
| 1614095_at | CF606244 | TC62268 | P06261 | NAD(P)H-quinone oxidoreductase | Complex 1 | 21 | 2.83 |
| 1609421_at | BQ795266 | TC62811 | O65414 | NADH dehydrogenase | Complex 1 | 11 | 2.75 |
| 1617757_at | CA818465 | TC58524 | Q6YSN0 | NADH dehydrogenase | Complex 1 | 21 | 2.42 |
| 1612005_s_at | CB004075 | TC64671 | Q68S01 | NADH dehydrogenase | Complex 1 | 3 | 2.27 |
| 1610869_at | CF515388 | TC56269 | Q8H2T7 | NADH dehydrogenase subunit | Complex 1 | 16 | 2.23 |
| 1610347_s_at | CF202826 | CF202826 | Q0ZIW2 | NAD(P)H-quinone oxidoreductase | Complex 1 | 10 | 2.1 |
| 1609391_s_at | CF404650 | TC53103 | Q41001 | Copper Binding Protein | Copper ion binding | 2 | 26.11 |
| 1620588_at | CD801157 | CD801157 | Q8LED5 | Mavicyanin | Copper ion binding | 6 | 25.27 |
| 1621220_at | CB919187 | TC59624 | Q9M510 | Dicyanin | Copper ion binding | 11 | 17.36 |
| 1610220_at | CB973621 | TC68272 | O81500 | Copper Binding Protein | Copper ion binding | 3 | 14.36 |
| 1617350_at | CB975555 | TC58747 | Q39131 | Copper Binding Protein | Copper ion binding | 3 | 10.21 |
| 1611332_at | CF371813 | TC59560 | Q653S5 | Blue copper binding protein (bcb) | Copper ion binding | 1 | 7.64 |
| 1607270_at | CB923224 | TC60083 | Q9ZRV5 | Copper Binding Protein | Copper ion binding | 2 | 5.87 |
| 1620744_at | CF403966 | TC65998 | P17340 | Plastocyanin, chloroplast precursor | Copper ion binding | 3 | 4.41 |
| 1617046_at | CF512505 | TC54856 | O23230 | Trichohyalin | Copper ion binding | 3 | 2.23 |
| 1609233_at | CF512410 | TC54170 | Q84RM1 | Copper Binding Protein | Copper ion binding | 2 | 2.21 |
| 1618207_at | CB347324 | TC52865 | Q9C540 | Cytochrome 561 | Electron carrier activity | 3 | 7.45 |
| 1612624_at | CB974055 | TC58854 | P06449 | Apocytochrome f | Electron carrier activity | 21 | 5.32 |
| 1611598_at | CB970208 | TC60594 | Q9ZSR3 | Cytochrome b-561 | Electron carrier activity | 2 | 4.54 |
| 1606617_at | CF608010 | TC65350 | O23344 | Electron transport | electron carrier activity | 3 | 2.49 |
| 1606704_s_at | CF200937 | CF200937 | P59702 | Cytochrome b559 alpha subunit | Electron carrier activity | 21 | 2.33 |
| 1615927_s_at | CB972155 | TC55109 | Q6Q8B8 | Chloroplast ferredoxin I | Electron carrier activity | 3 | 2.23 |
| 1607800_at | CB972521 | TC52149 | Q84WN3 | Cytochrome c oxidoreductase | Electron transport | 2 | 17.79 |
| 1620504_at | CB342755 | TC52829 | Q84WN3 | cytochrome c oxidoreductase | Electron transport | 7 | 14.78 |
| 1618535_at | CA818656 | CA818656 | Q6V5G1 | Cu2+ plastocyanin | Electron transport | 13 | 6.25 |
| 1615046_at | CF210436 | TC59116 | P41346 | Ferredoxin--NADP reductase | Electron transport | 3 | 5.61 |
| 1614266_at | BQ792322 | TC57184 | Q49KU9 | Cytochrome c heme attachment protein | Electron transport | 16 | 4.17 |
| 1613158_at | CB349843 | CB349843 | O47437 | Cytochrome c oxidase | Electron transport | 16 | 3.56 |
| 1612766_s_at | CF569219 | CF569219 | Q5PY86 | NADH-cytochrome b5 reductase | Electron Transport | 3 | 3.32 |
| 1619756_at | CB003378 | TC59085 | Q9LYC6 | Glutaredoxin | Electron transport | 14 | 2.88 |
| 1620991_at | CB344999 | TC58191 | O24068 | Cytochrome oxidase subunit 3 | Electron transport | 16 | 2.26 |
| 1606445_a_at | CF512668 | TC62694 | P26291 | Cytochrome B6-F complex iron-sulfur subuni | Electron transport | 3 | 2.16 |
| 1608372_at | CF208491 | TC51964 | Q6K7S7 | Cytochrome c biogenesis | Electron transport | 9 | 2.1 |
| 1621402_a_at | CF213496 | TC53161 | P00051 | Cytochrome c | Electron transport | 11 | 2.01 |
| 1607356_at | CB911288 | TC67262 | Q8LCF6 | Hypothetical Protein | ENERGY | 11 | 12.28 |
| 1611972_s_at | CF519112 | TC53292 | A4X6H5 | Cytochrome b | ENERGY | 3 | 11.63 |
| 1615762_at | CD798079 | TC66865 | O80763 | Hypothetical Protein | ENERGY | 10 | 4.82 |
| 1616241_at | CD797326 | CD797326 | Q8VYC5 | Hypothetical Protein | ENERGY | 16 | 4.08 |
| 1609285_at | CF414528 | TC57440 | Q9FFT2 | Hypothetical Protein | ENERGY | 2 | 3.44 |
| 1611820_at | CB914713 | TC69253 | O80763 | Hypothetical Protein | ENERGY | 3 | 3.09 |
| 1606562_at | CF404246 | TC59415 | A3J369 | Nitrilase 1 | ENERGY | 11 | 3.04 |
| 1621817_at | CB978007 | TC64650 | O80763 | Hypothetical Protein | ENERGY | 3 | 3 |
| 1614875_at | CF518552 | TC69033 | A5AU55 | Hypothetical Protein | ENERGY | 11 | 2.73 |
| 1622517_at | CB970523 | TC54809 | Q8W4Z5 | Hypothetical Protein | ENERGY | 3 | 2.39 |
| 1621903_at | CF404558 | TC62294 | Q9FE29 | Hypothetical Protein | ENERGY | 13 | 2.23 |
| 1612648_at | CD798203 | CD798203 | O80763 | Hypothetical Protein | ENERGY | 21 | 2.15 |
| 1622345_at | CB970837 | TC55633 | Q7XTZ0 | Mandelonitrile lyase | Flavoprotein | 2 | 4.87 |
| 1606948_at | CF404230 | CF404230 | Q01JW7 | Mandelonitrile lyase | Flavoprotein | 2 | 3.68 |
| 1622745_at | BQ796736 | TC58626 | Q8L5Q7 | Quinone oxidoreductase | FMN binding | 15 | 19.63 |
| 1615481_at | CB973026 | TC62178 | Q9ZSP7 | Cytochrome b5 DIF-F | Iron ion binding | 3 | 2.57 |
| 1606727_at | BQ799998 | TC62672 | Q58IV4 | Phytochrome C | Light Signaling | 10 | 2.38 |
| 1617604_at | CF609932 | TC59809 | Q94BM7 | Phytochrome A supressor spa1 protein | Light Signaling | 11 | 2.25 |
| 1611135_at | CB983077 | TC51911 | Q9SG92 | Alpha-hydroxynitrile lyase | Lyase activity | 11 | 2.92 |
| 1622108_at | CF405863 | TC56579 | Q9SU40 | Monocopper oxidase | Multicopper oxidase family | 3 | 23.07 |
| 1621115_at | CF609165 | TC64136 | Q9SU40 | Monocopper oxidase | Multicopper oxidase family | 1 | 20.1 |
| 1617992_a_at | CF213671 | TC60094 | P51132 | Ubiquinol--cytochrome-c reductase-like protein | Oxidative Phosphorespiration | 11 | 2.18 |
| 1611597_at | CB918250 | CB918250 | Q8LDU4 | Red chlorophyll catabolite reductase | Oxidoreductase activity | 12 | 2.03 |
| 1613786_at | CD714955 | TC57282 | Q6QY10 | P700 chlorophyll a apoprotein A1 | Photosystem I | 21 | 8.65 |
| 1611364_at | CF211293 | TC52528 | Q9XQB4 | Reaction center subunit III | Photosystem I | 3 | 7.67 |
| 1611464_at | CF215949 | TC59235 | Q9XF85 | Lhca5 protein | Photosystem I | 3 | 7.21 |
| 1621532_at | CB973721 | TC64270 | Q84QE6 | Reaction center subunit X psaK | Photosystem I | 3 | 7.15 |
| 1619903_at | CD720479 | TC65556 | Q40512 | Light-harvesting chlorophyll a/b-binding protein | Photosystem I | 3 | 6.96 |
| 1619629_at | CB340944 | TC66352 | Q5DNZ6 | Chlorophyll a-b binding protein | Photosystem I | 3 | 6.59 |
| 1622534_at | BQ799942 | TC53444 | Q84U30 | Photosystem I-N subunit | Photosystem I | 3 | 6.45 |
| 1611733_s_at | BQ797982 | TC52546 | Q70PN9 | Reaction centre PSI-D subunit precursor | Photosystem I | 3 | 6.44 |
| 1616560_at | CA817733 | TC62550 | Q84WT1 | Light-harvesting chlorophyll a/b binding protein | Photosystem I | 3 | 5.9 |
| 1611515_s_at | CB343423 | TC57304 | O65101 | Reaction center subunit VI | Photosystem I | 3 | 5.33 |
| 1618370_at | CF510718 | TC57721 | Q9SUI4 | Reaction center subunit XI | Photosystem I | 3 | 5.31 |
| 1617771_at | CF414158 | TC58342 | Q8RVJ8 | Reaction centre subunit IV | Photosystem I | 3 | 4.87 |
| 1618127_at | CB968637 | TC62932 | Q9SY97 | Chlorophyll a/b-binding protein | Photosystem I | 3 | 4.74 |
| 1614409_at | CA817387 | TC55189 | P13869 | Chlorophyll a-b binding protein | Photosystem I | 3 | 4.65 |
| 1614593_at | CF511805 | TC52379 | Q00321 | CP29 polypeptide | Photosystem I | 3 | 4.43 |
| 1611924_at | CA817406 | TC63702 | Q646H3 | Reaction center V | Photosystem I | 3 | 4.06 |
| 1611161_at | CF210442 | TC54044 | Q9ZU86 | Expressed protein | Photosystem I | 3 | 3.09 |
| 1622302_s_at | CF207602 | TC54765 | Q40459 | Oxygen-evolving enhancer protein 1 | Photosystem I | 3 | 2.8 |
| 1610245_at | CF209798 | TC53968 | Q41424 | Chlorophyll a/b binding protein | Photosystem II | 3 | 15.82 |
| 1615822_at | CF208321 | TC52049 | Q9XQB1 | LHCII type III chlorophyll a/b binding protein | Photosystem II | 3 | 10.43 |
| 1608311_at | CF202519 | CF202519 | Q7M1K9 | Chlorophyll a/b-binding protein | Photosystem II | 3 | 10.24 |
| 1616940_s_at | CB348709 | TC52113 | Q7M1K9 | Chlorophyll a/b-binding protein | Photosystem II | 3 | 9.95 |
| 1618116_s_at | BQ798823 | TC55659 | Q32291 | Chlorophyll A/B binding protein precursor | Photosystem II | 3 | 7.28 |
| 1611860_at | CF209952 | TC57521 | Q9XQB6 | Chlorophyll a/b-binding protein CP24 | Photosystem II | 3 | 6.6 |
| 1612085_at | CF413799 | TC54542 | Q41387 | Reaction center W protein | Photosystem II | 3 | 5.79 |
| 1621038_at | CF372077 | TC57214 | O64448 | Light harvesting chlorophyll a/b-binding protein precursor | Photosystem II | 3 | 5.77 |
| 1618679_s_at | CB343106 | TC52042 | Q9BBT1 | 44 kDa reaction center protein | Photosystem II | 16 | 5.41 |
| 1610203_at | CD009386 | TC56267 | Q7YJY8 | Photosystem Q(B) protein | Photosystem II | 21 | 5.11 |
| 1613991_at | CF510955 | TC53743 | P80470 | Core complex proteins psbY | Photosystem II | 3 | 4.77 |
| 1607516_at | CB972913 | TC53930 | Q9LRC4 | Oxygen evolving enhancer protein 1 precursor | Photosystem II | 3 | 4.66 |
| 1613428_at | CF207158 | TC52084 | Q5PYQ5 | Chloroplast oxygen-evolving enhancer protein | Photosystem II | 3 | 4.47 |
| 1607961_at | CF415716 | TC57429 | P31336 | 5 kDa protein | Photosystem II | 3 | 4.16 |
| 1614598_at | CF373065 | TC61762 | Q9XQB2 | Chlorophyll a/b binding protein CP29 | Photosystem II | 3 | 4.06 |
| 1613691_s_at | CF511746 | TC54828 | P27518 | Chlorophyll a-b binding protein 151 | Photosystem II | 3 | 3.84 |
| 1613773_s_at | BQ799145 | TC63656 | Q41387 | Reaction center W protein | Photosystem II | 3 | 3.34 |
| 1618031_s_at | CF404451 | TC53833 | Q8GV53 | 10 kDa protein | Photosystem II | 3 | 3.28 |
| 1621351_s_at | CB340283 | TC53732 | Q40961 | Light-harvesting chlorophyll a/b-binding protein precursor | Photosystem II | 3 | 3.2 |
| 1613494_s_at | CA813944 | TC55522 | Q9SLQ8 | Oxygen-evolving enhancer protein 2 | Photosystem II | 3 | 3.05 |
| 1617605_at | CF513977 | TC55526 | Q8HS34 | CP47 protein | Photosystem II | 18 | 2.99 |
| 1618274_at | CB972471 | TC55538 | Q4FFQ9 | Phosphoprotein | Photosystem II | 21 | 2.92 |
| 1610144_at | CB342508 | TC53591 | Q9MTN0 | Uncharacterized 6.9 kDa protein in psbD-trnT intergenic region | Photosystem II | 15 | 2.88 |
| 1611582_s_at | CB970190 | TC70959 | Q02060 | 22 kDa protein | Photosystem II | 3 | 2.69 |
| 1607926_at | CF202256 | CF202256 | Q9AR57 | Putative membrane protein | Photosystem II | 2 | 2.56 |
| 1621978_at | CB837910 | TC56626 | Q9M3M7 | Uncharacterized protein | Photosystem II | 16 | 2.31 |
| 1607803_at | CB975690 | TC52112 | Q06364 | 26S proteasome non-ATPase regulatory subunit 3 | Photosystem II | 21 | 2.31 |
| 1619523_at | CB969438 | TC67627 | Q952R1 | Succinate dehydrogenase | Succinate dehydrogenase activity | 15 | 2.24 |