Table 2.

Performance of classifiers trained to predict O-linked glycosylation sites

Performance Measure	SingleSVM	EnsembleSVM	BalancedSVM
Accuracy	0.88	0.89	0.85
MCC	0.55	0.59	0.57
Sensitivity	0.55	0.68	0.80
Specificity	0.67	0.64	0.53
F-Measure	0.61	0.66	0.64
AUC	0.88	0.91	0.90

Results obtained for O-linked glycosylation using single SVM from unbalanced data (singleSVM), ensemble of SVMs (EnsembleSVM), and single SVM from balanced data (BalancedSVM) for the classification threshold θ = 0.5 on the output probability of the classifier. The classifiers are trained on information derived from the target amino acid residue and its sequence neighbors.