TABLE 1.
Closest relatives of the sequenced DGGE bands
Band | % Similarity | Closest relative | Environment | Taxonomic affiliation as reported in GenBank | Accession no.a |
---|---|---|---|---|---|
1 | 99.1 | Clone PI_4z10f | Estuary | Alphaproteobacteria | AY580535 |
2 | 98.8 | Clone PLY-P3-42 | Marine | Bacteroidetes | AY354752 |
3 | 96.5 | Clone SW146 | Marine | Bacteroidetes | AF493676 |
4 | 97.0 | Clone 131677 | Marine | Bacteroidetes | AY922211 |
5 | 99.7 | Isolate ARK10048 | Marine (ice) | Bacteroidetes | AF468409 |
6 | 98.6 | Clone NorSea47 | Marine | Bacteroidetes | AM279194 |
7 | 98.3 | Isolate DG1021 | Marine | Bacteroidetes | AY258128 |
8 | 99.1 | DGGE Cytophagales ESR 4 | Lake | Bacteroidetes | AF268288 |
9 | 95.6 | Isolate GPl-11, Cytophaga sp. | Marine | Bacteroidetes | AJ456975 |
10 | 97.5 | Koliella spiculiformis, chloroplast gene | Lake | Plastid gene | AF278746 |
11 | 98.8 | Isolate WL5-12, CFB group | River | Bacteroidetes | AF497890 |
12 | 97.5 | DGGE band Cytophagales ESR 4 | Lake | Bacteroidetes | AF268288 |
13 | 97.6 | Clone SF54, Sphingobacteriales | Lake | Bacteroidetes | AJ697701 |
14 | 87.6 | Isolate CNJ537, Saprospira sp. | Marine | Bacteroidetes | AY527411 |
15 | 95.5 | Isolate DG945 | Marine | Bacteroidetes | AY258123 |
16 | 99.8 | Koliella spiculiformis, chloroplast gene | Lake | Plastid gene | AF278746 |
17 | 99.7 | Clone SF85, Sphingobacteriales | Lake | Bacteroidetes | AJ697706 |
18 | 99.5 | Sphingomonas subarctica, strain NKF1 | Freshwater biofilm | Alphaproteobacteria | X94104 |
19 | 97.3 | Chlorella mirabilis plastid DNA | Lake | Plastid gene | X65100 |
20 | 97.1 | Isolate BAL58 | Estuary | Betaproteobacteria | AY317112 |
21 | 99.6 | Synechococcus sp. strain MW73B4 | Lake | Cyanobacteria | AY151250 |
22 | 99.8 | Clone S9JA-48 | Lake | Actinobacteria | AB154320 |
23 | 99.6 | DGGE band betaproteobacterium zo33 | Lake | Betaproteobacteria | AF531004 |
24 | 99.8 | Synechococcus sp. strain MW99B6 | Lake | Cyanobacteria | AY151247 |
25 | 99.6 | Clone S9D-06 | Lake | Actinobacteria | AB154303 |
26 | 100 | Clone N5 | Lake | Actinobacteria | AJ575532 |
Nucleotide sequences can be accessed via http://www.ncbi.nlm.nih.gov/Entrez/.