TABLE 1.
Isolate | Sourcea | MLSTb
|
Presence (+) or absence (-) of toxin gene
|
||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ST | glpF | gmk | ilvD | pta | pur | pycA | tpi | hblA | hblC | hblD | nheA | nheB | nheC | entFM | bceT | cytK1 | cytK2 | em | ITS | ||
BC14 | EGP | 12 | 15 | 7 | 7 | 2 | 7 | 10 | 13 | + | + | + | + | + | + | + | - | - | - | - | + |
BC26 | EGP | 15 | 9 | 8 | 16 | 13 | 2 | 16 | 9 | + | + | + | + | + | + | - | + | + | - | - | + |
BC4 | EGP | 24 | 12 | 8 | 9 | 14 | 11 | 12 | 10 | + | + | + | + | + | + | + | - | + | - | - | + |
BC8 | EGP | 24 | 12 | 8 | 9 | 14 | 11 | 12 | 10 | + | + | + | + | + | + | + | - | + | + | - | + |
BC27 | REP | 24 | 12 | 8 | 9 | 14 | 11 | 12 | 10 | + | + | + | + | + | + | + | - | + | + | - | + |
BC37 | IDP | 24 | 12 | 8 | 9 | 14 | 11 | 12 | 10 | + | + | + | + | + | - | + | - | - | + | - | + |
BC7 | EGP | 26 | 3 | 2 | 31 | 5 | 16 | 3 | 4 | - | - | - | + | + | + | + | - | - | - | + | + |
BC9 | EGP | 142 | 13 | 8 | 8 | 11 | 9 | 12 | 7 | + | + | + | + | + | + | + | + | + | + | - | + |
BC17 | EGP | 142 | 13 | 8 | 8 | 11 | 9 | 12 | 7 | + | + | + | + | + | + | + | + | + | - | - | + |
BC29 | REP | 142 | 13 | 8 | 8 | 11 | 9 | 12 | 7 | + | + | + | + | + | + | + | + | + | - | - | + |
BC32 | REP | 142 | 13 | 8 | 8 | 11 | 9 | 12 | 7 | + | + | + | + | + | + | + | + | + | - | - | + |
BC30 | REP | 160 | 73 | 43 | 70 | 60 | 64 | 63 | 32 | - | - | - | + | + | + | + | + | - | - | - | + |
BC28 | REP | 205 | 19 | 2 | 21 | 5 | 19 | 3 | 2 | - | - | - | + | + | + | + | - | - | - | - | + |
BC1 | EGP | 369 | 48 | 30 | 33 | 37 | 44 | 103, EF421124 | 5 | - | - | - | + | + | + | + | - | - | - | - | + |
BC24 | EGP | 369 | 48 | 30 | 33 | 37 | 44 | 103, EF421124 | 5 | - | - | - | + | + | + | + | - | - | - | - | + |
BC2 | EGP | 370 | 14 | 8 | 43 | 11 | 115, EF421121 | 104, EF421125 | 85, EF421127 | + | + | + | + | + | + | + | + | - | + | - | + |
BC6 | EGP | 370 | 14 | 8 | 43 | 11 | 115, EF421121 | 104, EF421125 | 85, EF421127 | + | + | + | + | + | + | + | + | - | + | - | + |
BC15 | EGP | 370 | 14 | 8 | 43 | 11 | 115, EF421121 | 104, EF421125 | 85, EF421127 | + | + | + | + | + | + | + | + | - | + | - | + |
BC16 | EGP | 370 | 14 | 8 | 43 | 11 | 115, EF421121 | 104, EF421125 | 85, EF421127 | + | + | + | + | + | + | + | + | + | - | - | + |
BC19 | EGP | 370 | 14 | 8 | 43 | 11 | 115, EF421121 | 104, EF421125 | 85, EF421127 | + | + | + | + | + | - | + | + | - | - | - | + |
BC23 | EGP | 370 | 14 | 8 | 43 | 11 | 115, EF421121 | 104, EF421125 | 85 | + | + | + | + | + | + | + | + | + | + | - | + |
BC3 | EGP | 371 | 21 | 2 | 19 | 5 | 32 | 18 | 2 | + | + | - | + | + | + | + | - | - | - | - | + |
BC11 | EGP | 371 | 21 | 2 | 19 | 5 | 32 | 18 | 2 | - | + | - | + | + | + | + | - | + | + | - | + |
BC25 | EGP | 371 | 21 | 2 | 19 | 5 | 32 | 18 | 2 | - | + | - | + | + | + | + | - | - | + | - | + |
BC21 | EGP | 371 | 21 | 2 | 19 | 5 | 32 | 18 | 2 | - | - | - | + | + | + | + | - | - | + | - | + |
BC5 | EGP | 372 | 14 | 8 | 9 | 28 | 4 | 12 | 86, EF421128 | + | + | + | + | + | + | + | + | + | + | - | + |
BC10 | EGP | 373 | 22 | 9 | 18 | 18 | 46 | 19 | 7 | + | + | + | + | + | + | + | - | - | + | - | + |
BC13 | EGP | 374 | 29 | 2 | 24 | 5 | 32 | 3 | 2 | + | + | + | + | + | + | + | - | - | - | - | + |
BC20 | EGP | 374 | 29 | 2 | 24 | 5 | 32 | 3 | 2 | + | + | + | + | + | + | + | - | - | - | - | + |
BC22 | EGP | 374 | 29 | 2 | 24 | 5 | 32 | 3 | 2 | + | + | + | + | + | + | + | - | + | - | - | + |
BC18 | EGP | 375 | 110 | 34 | 111 | 102 | 112 | 96 | 26 | + | + | + | + | + | + | + | - | - | - | - | + |
BC33 | IDP | 376 | 112, EF421112 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | - | + | - | + |
BC36 | IDP | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | - | + | + | + | + | + | - | + | - | + |
BC38 | IDP | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | - | + | - | + |
BC39 | RWF | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | + | + | - | + |
BC40 | RWF | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | - | + | - | + |
BC46 | FDP | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | - | + | - | + |
BC47 | FDP | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | + | - | - | + |
BC48 | FDP | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | - | + | - | + |
BC49 | FDP | 376 | 8 | 8 | 14 | 12 | 2 | 50 | 7 | + | + | + | + | + | + | + | + | + | + | - | + |
BC34 | IDP | 377 | 8 | 70, EF421114 | 114, EF421115 | 110, EF421118 | 116, EF421122 | 105, EF421126 | 32 | - | - | - | + | + | + | + | - | - | - | - | + |
BC35 | IDP | 377 | 112, EF421112 | 70, EF421114 | 114, EF421115 | 110, EF421118 | 116, EF421122 | 105, EF421126 | 32 | - | - | - | + | + | + | + | - | - | - | - | + |
BC41 | FDP | 378 | 113, EF421113 | 31 | 115, EF421116 | 43 | 117, EF421123 | 53 | 37 | + | + | + | + | + | + | + | - | - | - | - | + |
BC45 | FDP | 379 | 33 | 17 | 13 | 112, EF421120 | 29 | 17 | 7 | - | - | - | + | + | + | + | - | - | - | - | + |
BC42 | FDP | 387 | 81 | 53 | 117, EF421117 | 111, EF421119 | 113 | 93 | 80 | + | + | + | + | + | - | + | - | - | - | - | + |
BC43 | FDP | 387 | 81 | 53 | 117, EF421117 | 111, EF421119 | 113 | 93 | 80 | + | + | + | + | + | + | + | - | - | - | - | + |
BC44 | FDP | 387 | 81 | 53 | 117, EF421117 | 111, EF421119 | 113 | 93 | 80 | + | + | + | + | + | + | + | - | - | - | - | + |
EGP, egg product; REP, ready-to-eat product; IDP, industrial dairy product; RWF, raw fish; FDP, farm dairy product.
Boldface numbers indicate new alleles. GenBank accession numbers (EF numbers) are provided for new allele sequences.