Table 1(a).
Genes expressed differently in P versus V.
| Gene symbol | Probe ID a | FC b | Gene description | Biological process c |
|---|---|---|---|---|
| Cd3g | 1419178_at | 1.5 | CD3 antigen, gamma polypeptide | Immune and hematopoietic system, cell surface receptor linked signal transduction |
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| Cd3e | 1445748_at | 1.5 | CD3 antigen, epsilon polypeptide | Cell surface receptor linked signal transduction, positive regulation of T cell proliferation and T cell receptor signaling pathway |
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| Cd4 | 1419696_at | 1.5 | CD4 antigen | Immune response, cell adhesion, cell surface receptor linked signal transduction, positive regulation of T cell activation |
|
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| Cd7 | 1419711_at | 1.5 | CD7 antigen | Immune response, myeloid cells antigen |
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| Cd8a | 1451673_at | 1.7 | CD8 antigen, alpha chain | Immune response, cell surface receptor linked signal transduction, cellular defense response, cytotoxic T cell differentiation |
|
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| Cd19 | 1450570_a_at | 1.9 | CD19 antigen | Lymphocyte progenitors |
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| Cd24a | 1416034_at | 9.8 | CD24a antigen | Cell surface antigen expressed in T and B lymphocytes, macrophages, dendritic endothelial, and epithelial cells |
|
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| Cd33 | 1450513_at | 1.5 | CD33 antigen | Myeloid cells antigen, cell adhesion |
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| Cd37 | 1419206_at | 1.7 | CD37 antigen | B and T cell antigen |
|
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| Cd96 | 1419226_at | 1.5 | CD96 antigen | T-cell activation, cell adhesion |
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| Cd207 | 1425243_at | 1.5 | CD 207 antigen | Specific for Langerhans cell precursors |
|
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| Cd209b | 1426157_a_at | 1.7 | CD209b antigen | Dendritic cell-specific, positive regulation of tumor necrosis factor-alpha biosynthesis, positive regulation of phagocytosis |
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| Cd209c | 1421562_at | 1.9 | CD209c antigen | Dendritic cell specific |
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| Cxcl9 | 1418652_at | 1.6 | Chemokine (C-X-C motif) ligand 9 | Inflammatory response, immune response |
|
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| Cxcl13 | 1448859_at | 2.0 | Chemokine (C-X-C motif) ligand 13 | Chemotaxis, inflammatory response, immune response, lymph node development |
|
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| Cxcl16 | 1418718_at | 1.7 | Chemokine (C-X-C motif) ligand 16 | Chemotaxis, keratinocytes, released into the wound after injury |
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| Fgf4 | 1450282_at | 1.8 | Fibroblast growth factor 4 | Trophoblast proliferation and differentiation, regulation of progression through cell cycle, stem cell maintenance, embryonic limb and hindlimb morphogenesis, odontogenesis, negative regulation of apoptosis |
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| Gata4 | 1441364_at | 1.6 | GATA binding protein 4 | Embryonic development, regulation of transcription, heart development, embryonic gut morphogenesis |
|
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| Gjb1 | 1448766_at | 1.6 | Gap junction membrane channel protein beta 1 | Cell communication, cell-cell signaling |
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| Kit/CD117 | 1452514_a_at | 1.6 | Kit oncogene | Germ cell development, transmembrane receptor protein tyrosine kinase signaling pathway, cell proliferation, cytokine and chemokine mediated signaling pathway, hematopoiesis, cell differentiation |
|
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| Kdr | 1449379_at | 1.6 | Kinase insert domain protein receptor | Angiogenesis, vasculogenesis, transmembrane receptor protein tyrosine kinase signaling pathway, development, cell migration, hemopoiesis, cell differentiation, cell fate commitment, endothelial cell differentiation |
|
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| Nkx2-5 | 1449566_at | 1.9 | NK2 transcription factor related, locus 5 | Regulation of transcription, embryonic heart tube development |
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| Psca | 1451258_at | 1.5 | Prostate stem cell antigen | |
|
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| Pou3f2 | 1450831_at | 1.7 | POU domain, class 3, transcription factor 2 | Positive regulation of cell proliferation, regulation of transcription |
|
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| Pou5f1/Oct-4 | 1417945_at | 1.5 | POU domain, class 5, transcription factor 1 | Germ-line stem cell maintenance, expressed in mouse totipotent embryonic stem and germ cells, regulation of transcription |
|
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| Sox10 | 1451689_a_at | 2.3 | SRY-box containing gene 10 | Regulation of transcription, cell differentiation and maturation |
|
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| Thy1/CD90 | 1423135_at | 1.5 | Thymus cell antigen 1, theta | MSC specific marker |
|
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| Utf1 | 1416899_at | 1.5 | Undifferentiated embryonic cell transcription factor 1 | Regulation of transcription |
|
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| Col4a3bp | 1420384_at | −1.6 | Procollagen, type IV, alpha 3 binding protein | Goodpasture antigen binding protein |
|
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| Egr2/Krox20 | 1427683_at | −3.9 | Early growth response 2 | Schwann cell differentiation, myelination, rhythmic behavior, regulates osteocalcin expression |
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| Falz | 1427310_at | −3.2 | Fetal Alzheimer antigen | Negative regulation of transcription |
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| H2-K1 | 1426324_at | −4.2 | Histocompatibility 2, K1, K region | Immune response, antigen presentation, endogenous antigen via MHC class I |
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| Lif | 1421207_at | −8.7 | Leukemia inhibitory factor (transient downregulation during cell growth) | Embryonic stem cell maintenance, immune response, tyrosine phosphorylation of Stat3 protein, muscle morphogenesis, neuron development |
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| Lifr | 1425107_a_at | −5.8 | Leukemia inhibitory factor receptor | Positive regulation of cell proliferation |
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| TNFRSF11b/OPG | 1449033_aat | −34.6 | Tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) | Apoptosis, signal transduction, negative regulation of osteoclastogenesis |
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| Zfp42/Rex-1 | 1451244_a_at | −1.9 | Zinc finger protein 42 | The putative human stem cell marker, Rex-1 (Zfp42): structural classification and expression in normal human epithelial and carcinoma cell cultures |