Table 3.

Genes regulated differently in PR versus P and P versus V conditions.

Gene symbol	Probe ID a	FC b		Gene description	Biological process c
		PR versus P	P versus V
Actc1	1415927_at	−1.5	2.0	Actin, alpha, cardiac	Cytoskeleton organization and biogenesis, muscle development, regulation of heart and muscle contraction
Actg2	1422340_a_at	−4.7	2.3	Actin, gamma 2, smooth muscle, enteric	Cytoskeleton organization and biogenesis, muscle development
Cd97	1418394_a_at	2.3	−2.1	CD97 antigen	Cell adhesion, signal transduction, G-protein coupled receptor protein signaling pathway, neuropeptide signaling pathway
Cd166 (ALCAM)	1437466_at	2.1	−1.5	Activated leukocyte cell adhesion molecule	Cell adhesion, axon guidance, motor axon guidance
Cxcl1	1419209_at	−2.7	1.8	Chemokine (C-X-C motif) ligand 1	Regulation of progression through cell cycle, inflammatory response, immune response
Cxcl4	1448995_at	−2.1	2.8	Chemokine (C-X-C motif) ligand 4	Chemotaxis, immune response, negative regulation of angiogenesis, cytokine, and chemokine mediated signaling pathway, platelet activation, negative regulation of megakaryocyte differentiation
Cxcl12 (SDF-1)	1417574_at	−2.4	7.5	Chemokine (C-X-C motif) ligand 12 (stem cell differentiation factor)	Patterning of blood vessels, ameboidal cell migration, chemotaxis, immune response, germ cell development and migration, brain development, motor axon guidance, T cell proliferation, induction of positive chemotaxis
Cxcl16	1456428_at	−1.7	1.7	Chemokine (C-X-C motif) ligand 15	Chemotaxis, inflammatory response, immune response, signal transduction, hematopoiesis, neutrophil chemotaxis
Foxa1	1418496_at	−1.5	1.9	Forkhead box A1	Regulation of transcription, lung development, epithelial cell differentiation, branching morphogenesis of a tube
Kitl	1415854_at	−4.1	5.2	Kit ligand	Cell adhesion, germ cell development, positive regulation of peptidyl-tyrosine phosphorylation, cytokine product associated with MSC/stromal cells, stem cell factor
Ntf3	1450803_at	−1.5	1.9	Neurotrophin 3	Neuromuscular synaptic transmission, glial cell fate determination, axon guidance, brain and peripheral nervous system development, epidermis development, mechanoreceptor differentiation, regulation of neuron apoptosis
Pdgf$\alpha$	1421916_at	−2.1	1.6	Platelet derived growth factor receptor, alpha polypeptide	Protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, morphogenesis, organ morphogenesis, extracellular matrix organization and biogenesis, male genitalia development, odontogenesis
Tnfsf11 (RANKL)	1419083_at	−1.6	9.2	Tumor necrosis factor (ligand) superfamily, member 11	Positive regulation of osteoclast differentiation and bone resorption, immune response, lymph node development
Snai2	1418673_at	−6.4	1.9	Snail homolog 2 (Drosophila)	Development of human melanocytes, regulation of transcription, DNA dependent, development, response to radiation, regulation of survival gene product activity
Vegfc	1419417_at	−5.6	11.5	Vascular endothelial growth factor C	Regulation of progression through cell cycle, angiogenesis, positive regulation of neuroblast proliferation, development, positive regulation of cell proliferation, organ morphogenesis

^aAffymetrix probe ID

^bfold change

^cgene ontology [28]