Table 2.
Protein domains of genes identified by RaSH
| Gene | Amino acids | Protein domain | E-value | % aligned | Position |
| cpc2 | 292 | WD40 | 2.0E-60 | 93.1% | 3–286 |
| phr1 | 591 | Deoxyribodipyrimidine photolyase | 7.0E-124 | 99.3% | 96–584 |
| FAD_binding_7 | 2.0E-97 | 100% | 316–587 | ||
| rpl7 | 248 | Ribosomal_L7 | 5.0E-66 | 100% | 88–247 |
| Ribosomal_L30 | 2.0E-14 | 100% | 87–139 | ||
| ubi4 | 305 | Ubiquitin | 7.0E-33 | 100% | 1–76 |
| Ubiquitin | 7.0E-33 | 100% | 77–152 | ||
| Ubiquitin | 7.0E-33 | 100% | 153–228 | ||
| Ubiquitin | 7.0E-33 | 100% | 229–304 | ||
| tre9347 | 700 | NAD_synthase | 3.0E-59 | 99.2% | 328–653 |
| Carbon-nitrogen hydrolase | 1.0E-18 | 100% | 6–201 | ||
| Predicted amidohydrolase | 4.0E-27 | 91.6% | 5–282 | ||
| tre10571 | 534 | Major facilitator superfamily MFS_1 | 4.0E-12 | 100% | 31–443 |
| Arabinose efflux permease | 7.0E-13 | 46.7% | 26–208 | ||
| Fungal trichothecene efflux pump (TRI12) | 2.0E-06 | 34.3% | 102–303 | ||
| tre16112 | 304 | Hydroxybenzoate polyprenyltransferase | 2.0E-32 | 99.7% | 2–289 |
| UbiA prenyltransferase family | 5.0E-23 | 100% | 24–301 | ||
| tre20863 | 648 | Succinate dehydrogenase/fumarate reductase | 2.0E-168 | 100% | 56–631 |
| FAD binding domain | 2.0E-140 | 99.4% | 162–492 | ||
| Aspartate oxidase | 1.0E-92 | 93.8% | 85–618 | ||
| Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain | 4.0E-44 | 100% | 513–648 | ||
| tre22454 | 180 | NTPase/HAM1 | 1.0E-54 | 100% | 5–178 |
| Xanthosine triphosphate pyrophosphatase | 2.0E-45 | 96.9% | 5–180 | ||
| tre22667 | 193 | Ribosomal protein L6P/L9E | 4.0E-30 | 97.2% | 1–187 |
| Ribosomal protein L6 | 7.0E-07 | 100% | 97–180 | ||
| tre31929 | 270 | Adenylate kinase | 3.0E-75 | 100% | 44–231 |
| Adenylate kinase, active site lid | 2.0E-12 | 100% | 167–202 | ||
| tre35050 | 104 | - | - | - | - |
| tre39031 | 711 | Peptidase_M49 | 6.0E-170 | 98.8% | 143–709 |
| tre39397 | 465 | Sugar (and other) transporter | 7.0E-13 | 87.1% | 44–462 |
| tre40105 | 331 | - | - | - | - |
| tre41865 | 183 | Perilipin | 2.0E-04 | 27.4% | 15–110 |
| tre42719 | 537 | IMP dehydrogenase/GMP reductase domain | 1.0E-159 | 99.4% | 42–526 |
| CBS domain | 3.0E-13 | 93.2% | 130–236 | ||
| Predicted transcriptional regulator | 7.0E-09 | 36.7% | 130–238 | ||
| NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding superfamily domain | 1.0E-04 | 99.1% | 195–397 | ||
| tre45629 | 356 | Porphyromonas-type peptidyl-arginine deiminase | 1.0E-67 | 100% | 6–353 |
| tre72859 | 114 | - | - | - | - |