Abstract
The problem of the mechanism of pepsin action is considered in relation to recent data on the kinetics and specificity of the enzyme, as well as the finding, reported here, that pepsin exhibits a deuterium isotope effect in the cleavage of a peptide bond.
The kinetic parameters for the hydrolysis of the Phe(NO2)-Phe bond of Gly-Gly-Gly-Phe(NO2)-Phe-OMe by pepsin have been determined in H2O and in D2O. The finding of a significant deuterium isotope effect (kH2O/kD2O = ca. 2) supports the hypothesis that the catalytic mechanism of pepsin involves the participation, in the rate-limiting step, of a proton donor (probably an enzymic carboxyl group) in addition to an enzymic carboxylate group acting as a nucleophile.
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- BENDER M. L., KEZDY J. MECHANISM OF ACTION OF PROTEOLYTIC ENZYMES. Annu Rev Biochem. 1965;34:49–76. doi: 10.1146/annurev.bi.34.070165.000405. [DOI] [PubMed] [Google Scholar]
- CLELAND W. W. The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations. Biochim Biophys Acta. 1963 Jan 8;67:104–137. doi: 10.1016/0006-3002(63)91800-6. [DOI] [PubMed] [Google Scholar]
- Clement G. E., Snyder S. L., Price H., Cartmell R. The pH dependence of the pepsin-catalyzed hydrolysis of neutral dipeptides. J Am Chem Soc. 1968 Sep 25;90(20):5603–5610. doi: 10.1021/ja01022a053. [DOI] [PubMed] [Google Scholar]
- Delpierre G. R., Fruton J. S. Inactivation of pepsin by diphenyldiazomethane. Proc Natl Acad Sci U S A. 1965 Oct;54(4):1161–1167. doi: 10.1073/pnas.54.4.1161. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Delpierre G. R., Fruton J. S. Specific inactivation of pepsin by a diazo ketone. Proc Natl Acad Sci U S A. 1966 Dec;56(6):1817–1822. doi: 10.1073/pnas.56.6.1817. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Denburg J. L., Nelson R., Silver M. S. The effect of pH on the rates of hydrolysis of three acylated dipeptides by pepsin. J Am Chem Soc. 1968 Jan 17;90(2):479–486. doi: 10.1021/ja01004a046. [DOI] [PubMed] [Google Scholar]
- ERLANGER B. F., VRATSANOS S. M., WASSERMANN N., COOPER A. G. SPECIFIC AND REVERSIBLE INACTIVATION OF PEPSIN. J Biol Chem. 1965 Aug;240:PC3447–PC3448. [PubMed] [Google Scholar]
- Erlanger B. F., Vratsanos S. M., Wassermann N., Cooper A. G. A chemical investigation of the active center of pepsin. Biochem Biophys Res Commun. 1966 May 3;23(3):243–245. doi: 10.1016/0006-291x(66)90535-3. [DOI] [PubMed] [Google Scholar]
- FRUTON J. S., FUJII S., KNAPPENBERGER M. H. The mechanism of pepsin action. Proc Natl Acad Sci U S A. 1961 Jun 15;47:759–761. doi: 10.1073/pnas.47.6.759. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fry K. T., Kim O. K., Kettering C. F., Spona J., Hamilton G. A. A reactive aspartyl residue of pepsin. Biochem Biophys Res Commun. 1968 Mar 12;30(5):489–495. doi: 10.1016/0006-291x(68)90078-8. [DOI] [PubMed] [Google Scholar]
- HERRIOTT R. M. The active groups of pepsin. J Cell Physiol Suppl. 1956 May;47(Suppl 1):239–243. doi: 10.1002/jcp.1030470417. [DOI] [PubMed] [Google Scholar]
- Hamilton G. A., Spona J., Crowell L. D. The inactivation of pepsin by an equimolar amount of 1-diazo-4-phenylbutanone-2. Biochem Biophys Res Commun. 1967 Jan 23;26(2):193–198. doi: 10.1016/0006-291x(67)90233-1. [DOI] [PubMed] [Google Scholar]
- Hollands T. R., Fruton J. S. Kinetics of the hydrolysis of synthetic substrates by pepsin and by acetyl-pepsin. Biochemistry. 1968 Jun;7(6):2045–2053. doi: 10.1021/bi00846a005. [DOI] [PubMed] [Google Scholar]
- Hollands T. R., Voynick I. M., Fruton J. S. Action of pepsin on cationic synthetic substrates. Biochemistry. 1969 Feb;8(2):575–585. doi: 10.1021/bi00830a017. [DOI] [PubMed] [Google Scholar]
- Inouye K., Fruton J. S. Studies on the specificity of pepsin. Biochemistry. 1967 Jun;6(6):1765–1777. doi: 10.1021/bi00858a027. [DOI] [PubMed] [Google Scholar]
- Inouye K., Fruton J. S. The inhibition of pepsin action. Biochemistry. 1968 May;7(5):1611–1615. doi: 10.1021/bi00845a001. [DOI] [PubMed] [Google Scholar]
- Inouye K., Voynick I. M., Delpierre G. R., Fruton J. S. New synthetic substrates for pepsin. Biochemistry. 1966 Jul;5(7):2473–2483. doi: 10.1021/bi00871a044. [DOI] [PubMed] [Google Scholar]
- Knowles J. R., Wybrandt G. B. The sequence around an active-site aspartyl residue in pepsin. FEBS Lett. 1968 Sep;1(4):211–212. doi: 10.1016/0014-5793(68)80063-8. [DOI] [PubMed] [Google Scholar]
- Kozlov L. V., Ginodman L. M., Orekhovich V. N. Inaktivatsiia pepsina alifaticheskimi diazokarbonil'nymi soedineniiami. Biokhimiia. 1967 Sep-Oct;32(5):1011–1019. [PubMed] [Google Scholar]
- Kozlov L. V., Ginodman L. M., Orekhovich V. N., Valueva T. A. Svobodnaia énergiia gidroliza peptidnoi sviazi i fermentativnyi sintez éfirov N-atsetildipeptidov. Biokhimiia. 1966 Mar-Apr;31(2):315–321. [PubMed] [Google Scholar]
- Lutsenko N. G., Ginodman L. M., Orekhovich V. N. Opredelenie konstant ionizatsii funktsional'nykh grupp aktivnogo tsentra pepsina. Biokhimiia. 1967 Mar-Apr;32(2):223–227. [PubMed] [Google Scholar]
- NEUMANN H., LEVIN Y., BERGER A., KATCHALSKI E. Pepsincatalysed transpeptidation of the amino-transfer type. Biochem J. 1959 Sep;73:33–41. doi: 10.1042/bj0730033. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rajagopalan T. G., Stein W. H., Moore S. The inactivation of pepsin by diazoacetylnorleucine methyl ester. J Biol Chem. 1966 Sep 25;241(18):4295–4297. [PubMed] [Google Scholar]
- Reid T. W., Fahrney D. The pepsin-catalyzed hydrolysis of sulfite esters. J Am Chem Soc. 1967 Jul 19;89(15):3941–3943. doi: 10.1021/ja00991a072. [DOI] [PubMed] [Google Scholar]
- SHARON N., GRISARO V., NEUMANN H. Pepsin-catalyzed exchange of oxygen atoms between water and carboxylic acids. Arch Biochem Biophys. 1962 Apr;97:219–221. doi: 10.1016/0003-9861(62)90070-x. [DOI] [PubMed] [Google Scholar]
- Shkarenkova L. S., Ginodman L. M., Kozlov L. V., Orekhovich V. N. Vkliuchenie O18 iz H2O18 v karboksil'nye gruppy aktivnogo tsentra pepsina. Biokhimiia. 1968 Jan-Feb;33(1):154–161. [PubMed] [Google Scholar]
- Wang J. H. Facilitated proton transfer in enzyme catalysis. It may have a crucial role in determining the efficiency and specificity of enzymes. Science. 1968 Jul 26;161(3839):328–334. doi: 10.1126/science.161.3839.328. [DOI] [PubMed] [Google Scholar]
- Wang J. H., Parker L. Pretransition-state protonation and the rate of chymotrypsin catalysis. Proc Natl Acad Sci U S A. 1967 Dec;58(6):2451–2454. doi: 10.1073/pnas.58.6.2451. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zeffren D., Kaiser E. T. Inhibition of the pepsin catalyzed hydrolysis of diphenyl sulfite by N-acetyl-L-phenyl-alanine, 3,5-dibromo-L-tryosine and N-acetyl-L-phenylalanyl-3,5-dibromo-L-tyrosine. Arch Biochem Biophys. 1968 Sep 10;126(3):965–967. doi: 10.1016/0003-9861(68)90495-5. [DOI] [PubMed] [Google Scholar]