TABLE 2.
Characteristics of isolates in this study
| BURP group (c6)a | BURP group (c4)b | Spa type | MLST (no. of isolates) | MLST CCc | MP profile (no. of isolates) | Methicillin resistance phenotype (no. of isolates) |
|---|---|---|---|---|---|---|
| A (t044) | A1 (t044) | t042 | ST080 (1d) | 80 | etd lukPV | MRSA |
| t044 | ST080 (12; 8d) | 80 | etd lukPV | MRSA | ||
| t131 | ST080 (4; 2d) | 80 | etd lukPV | MRSA | ||
| t376 | ST080 (2d) | 80 | etd lukPV | MRSA | ||
| t434 | ST080 (1d) | 80 | etd lukPV | MRSA | ||
| t455 | ST080 (1d) | 80 | etd lukPV | MRSA | ||
| t1198 | ST080 (1d) | 80 | etd lukPV | MSSA | ||
| t267 | ST097 (2) | 97 | —e | MSSA | ||
| t359 | ST097 (2d) | 97 | — | MRSA | ||
| t521 | ST097 (1d) | 97 | — | MSSA | ||
| t657f | ST772 (1d) | 1 | lukPV | MSSA | ||
| A2 | t209 | ST109 (1d) | — | MSSA | ||
| A3 | t189 | ST188 (2d) | — | MSSA | ||
| A4 | t175 | ST001 (2d) | 1 | seh lukPV | MRSA | |
| A5 (t127) | t114 | ST001 (1d) | 1 | seh | MSSA | |
| t127 | ST001 (11, 5d) | 1 | seh (10), seh lukPV (1) | MRSA (8), MSSA (3) | ||
| t127 | ST081 (1d) | 1 | seh | MSSA | ||
| t127 | ST748 (1d) | 1 | seh | MSSA | ||
| t127 | ST852 (1d) | 1 | seh lukPV | MSSA | ||
| t128 | ST001 (1d) | 1 | seh lukPV | MRSA | ||
| t321 | ST001 (1d) | 1 | seh | MSSA | ||
| t591 | ST001 (1d) | 1 | seh | MRSA | ||
| t1383 | ST001 (1d) | 1 | seh | MRSA | ||
| t1388 | ST081 (1d) | 1 | seh | MSSA | ||
| A6 (t273) | t273 | ST001 (1d) | 1 | seh | MSSA | |
| t343 | ST001 (1d) | 1 | seh | MSSA | ||
| t1491 | ST001 (1d) | 1 | seh | MSSA | ||
| t1775 | ST001 (1d) | 1 | seh | MSSA | ||
| t1931 | ST001 (1d) | 1 | seh | MSSA | ||
| A7 (t084/t346) | t084 | ST015 (1d) | 15 | — | MSSA | |
| t085 | ST015 (1d) | 15 | — | MSSA | ||
| t094 | ST015 (1d) | 15 | — | MSSA | ||
| t346 | ST015 (1d) | 15 | — | MSSA | ||
| t499 | ST015 (1d) | 15 | — | MSSA | ||
| t091 | ST007 (1d) | 7 | — | MSSA | ||
| B (t305) | B1 (t024) | t008 | ST008 (31, 6d) | 8 | — (5), arcA lukPV (16), arcA (7), lukPV (3) | MRSA (28), MSSA (3) |
| t024 | ST008 (5) | 8 | — | MRSA (3), MSSA (2) | ||
| t305 | ST617 (7, 2d) | 45 | — | MRSA | ||
| B2 | t1105 | ST617 (1d) | 45 | — | MRSA | |
| C (t002) | C | t002 | ST005 (2d) | 5 | lukPV (1) | MRSA |
| t311 | ST005 (1d) | 5 | lukPV | MRSA | ||
| D | D | t435 | ST121 (4) | 121 | lukPV | MSSA |
| t645 | ST121 (1d) | 121 | — | MSSA | ||
| E | E | t012 | ST030 (1d) | 30 | etd | MRSA |
| t318 | ST030 (1) | 30 | lukPV | MRSA | ||
| F | F | t310 | ST022 (3) | 22 | lukPV | MRSA |
| G | G | t355 | ST152 (2d) | lukPV | MRSA | |
| H | H | t437 | ST059 (1d) | 59 | lukPV | MRSA |
| A (t044)I | I | t1028 | ST154 (1d) | — | MRSA |
Results of BURP grouping with calculated cost between members of a group less than or equal to 6. Types in parentheses indicate the putative ancestor of the group as defined by BURP analysis.
Results of BURP grouping with calculated cost between members of a group less than or equal to 4. Types in parentheses indicate the putative ancestor of the group as defined by BURP analysis.
CCs as defined by eBURST analysis with a stringent group definition with six of seven loci.
Number of isolates with confirmed MLST types; all other MLST data were inferred on the basis of the spa-MLST mappings done previously at our institute.
—, negative for the relevant determinants.
Boldface indicates a false classification of the isolates on the basis of the MP profile.