TABLE 3.
Comparison of amino acid sequences for the HA1 subunit of H1N1 isolates collected from 2002 to 2006
Group | Strain | Substitution at the following amino acid residue in HA1 (H3 numbering)a:
|
||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
77 | 81d | 90 | 101 | 133 | 144 | 149 | 158 | 169 | 190 | 197 | 212 | 255 | 256 | 270 | ||
A/New Caledonia/20/99b | E | K | T | Y | V | K | R | N | V | N | T | R | W | Y | T | |
I | A/Hanoi/1892/02 | —c | — | — | — | — | — | — | — | A | D | — | — | R | — | — |
I | A/Hanoi/1863/02 | — | — | — | — | — | — | — | — | A | — | — | — | R | — | — |
II | II A/Hanoi/1873/02 | — | — | — | — | — | — | — | S | A | — | — | — | R | — | — |
II | A/Hanoi/719/03 | — | — | — | — | — | — | — | S | A | D | — | — | R | — | — |
II | A/Hanoi/784b/03 | — | — | — | — | — | — | — | S | A | V | — | — | R | — | — |
III | III A/Hanoi/ISBM15/05 | — | — | — | — | — | — | — | — | A | — | — | — | R | F | — |
III | A/Hanoi/TX09/06 | — | — | — | — | — | — | — | — | A | D | — | — | R | F | — |
III | A/Hanoi/Q177/06 | — | — | — | — | — | — | — | K | A | D | — | — | R | F | — |
IV | IV A/Hanoi/BM344/06 | D | R | K | H | T | E | K | — | A | D | — | K | R | — | N |
IV | A/Solomon Islands/3/06 | — | R | K | H | T | E | K | — | A | D | K | K | R | — | N |
Results are reported as amino acid differences between the sequences of the isolates and that of the A/New Caledonia/20/99 vaccine strain.
Italic type indicates the reference vaccine strain.
—, no change.
Differences located in the proposed antigenic sites are underlined.