Table 2.
Marker | Gene position | Chromosome position | Alleles | Common allele (%) | Call rate (%) | Chi2 of HWE |
ESR1 (Chromosome 6) | ||||||
rs488133 | 5' | 152217558 | C > T | 68 | 98 | 0.45 |
rs532010 | 5' | 152223032 | A > G | 65 | 98 | 0.95 |
rs11155813 | intron 1 | 152241549 | T > C | 88 | 96 | 0.06 |
rs1709182 | intron 2 | 152267471 | T > C | 66 | 96 | 0.81 |
rs1709183 | intron 2 | 152286110 | T > C | 72 | 98 | 0.4 |
rs9340835 | intron 2 | 152292045 | G > A | 68 | 98 | 0.06 |
rs6557170 | intron 3 | 152295218 | G > A | 79 | 95 | 0.97 |
rs2347867 | intron 3 | 152321964 | A > G | 68 | 98 | 0.17 |
rs9397456 | intron 3 | 152339266 | G > A | 80 | 98 | 0.15 |
rs12154178 | intron 3 | 152343194 | A > C | 72 | 98 | 0.59 |
rs3020317 | intron 4 | 152370855 | T > C | 82 | 98 | 0.03 |
rs1884051 | intron 4 | 152375393 | A > G | 71 | 98 | 0 |
rs1884054 | intron 4 | 152383680 | A > C | 67 | 98 | 0.47 |
rs7754762 | intron 4 | 152403651 | T > A | 87 | 97 | 1.61 |
rs7757956 | intron 4 | 152409254 | T > A | 86 | 98 | 2.69 |
rs9340954 | intron 4 | 152412286 | T > G | 70 | 98 | 2.89 |
rs3020368 | intron 5 | 152463304 | C > T | 91 | 97 | 0.05 |
rs3778082 | intron 6 | 152479778 | G > A | 86 | 95 | 1.76 |
rs2982896 | intron 6 | 152491607 | C > T | 77 | 97 | 0.01 |
rs3020383 | intron 7 | 152508893 | G > C | 92 | 97 | 0.28 |
rs3778099 | intron 7 | 152510689 | T > C | 87 | 97 | 1.18 |
rs2813544 | 3' | 152517696 | A > G | 79 | 98 | 0.88 |
rs1543403 | 3' | 152520818 | G > C | 52 | 96 | 1.48 |
ESR2 (Chromosome 14) | ||||||
rs3020450 | 5' | 63838055 | C > T | 70 | 93 | 6.29a |
rs1271572 | 5' | 63831670 | C > A | 54 | 98 | 1.03 |
rs1887994 | intron 1 | 63830364 | C > A | 89 | 97 | 0.28 |
rs7159462 | intron 1 | 63828629 | C > T | 92 | 97 | 0.14 |
rs1269056 | intron 3 | 63813643 | C > T | 56 | 97 | 1.3 |
rs7154455 | intron 3 | 63806413 | G > C | 64 | 83 | 0.23 |
rs1256061 | intron 7 | 63773346 | G > T | 50 | 97 | 1.89 |
rs1256063 | intron 7 | 63771970 | G > A | 91 | 94 | 0.27 |
rs4986938 | 3' | 63769569 | G > A | 62 | 100 | 0.56 |
rs928554 | 3' | 63763948 | A > G | 56 | 100 | 2.8 |
rs1152582 | 3' | 63762383 | C > G | 56 | 98 | 0.71 |
a) HWE among controls n.s.