Table 2.
A selection of characterized AUMA bands
| Band ID | Size (bp) | % GC | Chromosome map (Locationa) | Gene | CpG islandb | Repetitive elements in band ends (5′/3′) | Methylation status in tumorc |
|---|---|---|---|---|---|---|---|
| Ai1 c3 | 509 | 55 | 17p11.2 (18206453–18206961) | SHMT1 | Yes | Alu Sx/MIR | Hypermethylated |
| Aj2 c1 | 458 | 49 | 1q32.2 (206389082–206389539) | MGC29875 | Yes | Alu Sq/None | Hypomethylated |
| Ao1 c4 | 365 | 50 | 19q13.32 (53550179–53550543) | AK001784 | No | Alu Sx/MIRb | Hypomethylated |
| Ap1 c6 | 358 | 56 | 5q35.2 (175157321–175157674) | CPLX2 | Yes | None/MIR | Hypermethylated |
| Aq3 c6 | 339 | 58 | 8p23.3 (2007343–2007682) | MYOM2 | No | LTR/Alu Y | Hypomethylated |
| Ar3 c3 | 329 | 57 | 2q14.3 (127875178–127875506) | AF370412 | Yes | None/MIRb | Hypomethylated |
| As3 c6 | 306 | 63 | 16p13.3 (3160477–3160782) | None | Yes | None/None | Hypermethylated |
| Au4 c1 | 268 | 57 | 16p13.3 (3162099–3162366) | None | No | tRNA/None | Hypermethylated |
aNucleotide position within the contig (strand +). NCBI Build 36.1 of the human genome.
bThe whole sequence or a fragment of the sequence lays not further than 200 bp of a predicted CpG island.
cAs compared to the paired normal tissue.