Table 2.
Pseudogenes in all sequenced spheroid body genome fragments (totalling 192335 bp) and pseudogenes identified in the Cyanothece sp. ATCC 51142 genome region shown in Figure 1 (63344 bp)
| No. | Name | Best BlastX hit | Organism | Accession | e-value |
|---|---|---|---|---|---|
| sbp1* | fdxN* | FdxN | Cyanothece sp. PCC 8801 | AAC33373.1 | 0.070 |
| sbp2* | fldA* | Flavodoxin, long chain | Crocosphaera watsonii WH 8501 | ZP_00515759.1 | 2e-05 |
| sbp3* | sbp3* | hypothetical protein CwatDRAFT_1967 | Crocosphaera watsonii WH 8501 | ZP_00517249.1 | 7e-05 |
| sbp4* | sbp4* | hemolysin | Cyanothece sp. CCY0110 | ZP_01728583.1 | 3e-09 |
| sbp5* | sbp5* | Putative esterase | Crocosphaera watsonii WH 8501 | ZP_00514941.1 | 6e-16 |
| sbp6* | ubiH* | COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases | Nostoc punctiforme PCC 73102 | ZP_00110350.1 | 2e-17 |
| sbp7* | sbp7* | hypothetical protein CY0110_23906 | Cyanothece sp. CCY0110 | ZP_01727952.1 | 5e-09 |
| sbp8* | sbp8* | hypothetical protein CY0110_11227 | Cyanothece sp. CCY0110 | ZP_01730915.1 | 1e-18 |
| sbp9* | sbp9* | Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA | Crocosphaera watsonii WH 8501 | ZP_00518433.1 | 3e-09 |
| sbp10* | sbp10* | GDP-D-mannose dehydratase | Cyanothece sp. CCY0110 | ZP_01730804.1 | 1e-131 |
| sbp11* | sbp11* | NAD-dependent epimerase/dehydratase | Crocosphaera watsonii WH 8501 | ZP_00513970.1 | 5e-103 |
| sbp12* | sbp12* | hypothetical protein CwatDRAFT_2668 | Crocosphaera watsonii WH 8501 | ZP_00517115.1 | 3e-10 |
| sbp13* | uma4* | Uma4 (transposase homolog) | Microcystis aeruginosa PCC 7806 | AF183408_15 | 4e-05 |
| sbp14* | sbp14* | hypothetical protein CY0110_27355 | Cyanothece sp. CCY0110 | ZP_01729498.1 | 9e-07 |
| sbp15* | sbp15* | thioredoxin reductase | Lyngbya sp. PCC 8106 | ZP_01622501.1 | 8e-88 |
| sbp16* | sbp16* | putative transposase | Lyngbya sp. PCC 8106 | ZP_01618921.1 | 6e-65 |
| sbp17* | lldP* | hypothetical protein DSY2261 | Desulfitobacterium hafniense Y51 | YP_518494.1 | 1e-14 |
| sbp18* | sbp19* | Mg chelatase-related protein | Cyanothece sp. CCY0110 | ZP_01732243.1 | 2e-06 |
| sbp19* | sbp20* | hypothetical protein CY0110_07314 | Cyanothece sp. CCY0110 | ZP_01728735.1 | 2e-103 |
| sbp20* | rsbW* | Putative Anti-Sigma regulatory factor (Ser/Thr protein kinase) | Cyanothece sp. CCY0110 | ZP_01726436.1 | 0.011 |
| sbp21* | sbp22* | Anti-Sigma-factor antagonist (STAS) and sugar transfersase | Cyanothece sp. CCY0110 | ZP_01726435.1 | 7e-53 |
| sbp22* | sbp23* | transposase | Nostoc sp. PCC 7120 | NP_484634.1 | 4e-20 |
| sbp23* | IRK* | hypothetical protein CY0110_12822 | Cyanothece sp. CCY0110 | ZP_01729432.1 | 5e-28 |
| sbp24* | orfAB* | orfAB | Nostoc sp. PCC 7120 | AAC97588.1 | 3e-05 |
| sbp25* | sbp26* | Protein of unknown function DUF820 | Crocosphaera watsonii WH 8501 | ZP_00514570.1 | 2e-13 |
| sbp26* | sbp27* | probable sulfotransferase | Cyanothece sp. CCY0110 | ZP_01732095.1 | 4e-50 |
| sbp27* | sbp28* | COG3464: Transposase and inactivated derivatives | Nostoc punctiforme PCC 73102 | ZP_00108066.1 | 2e-11 |
| sbp28* | s_TKc* | serine/threonine protein kinase | Cyanothece sp. CCY0110 | ZP_01731251.1 | 4e-26 |
| sbp29* | sbp30* | hypothetical protein CwatDRAFT_4770 | Crocosphaera watsonii WH 8501 | ZP_00515299.1 | 8e-07 |
| sbp30* | dedA* | DedA | Lyngbya sp. PCC 8106 | ZP_01623614.1 | 2e-53 |
| sbp31* | sbp32* | hypothetical protein CY0110_03639 | Cyanothece sp. CCY0110 | ZP_01727528.1 | 5e-06 |
| sbp32* | melB * | Sodium:galactoside symporter | Crocosphaera watsonii WH 8501 | ZP_00517271.1 | 5e-22 |
| sbp33* | psbC* | photosystem II CP43 protein | Synechocystis sp. PCC 6803 | NP_441119.1 | 1,0 |
| sbp34* | psbD* | photosystem II D2 protein | Cyanothece sp. CCY0110 | ZP_01728138.1 | 5e-05 |
| cyp1* | cyp1* | hypothetical protein CY0110_22382 | Cyanothece sp. CCY0110 | ZP_01727759.1 | 2e-11 |
Pseudogenes within the nif-operon and downstream regions (genome regions shown in Figure 1) are indicated in grey.