Table 3.
Species | Class of GenTrain scores | Number of SNPs assayed | Number of segregating SNPs | Number of monomorphic SNPs | Average number of missing data per SNP scored | Average call rate per SNP scored (%)1 |
White spruce | ||||||
<0.25 | 165 | 0 | 0 | - | - | |
0.25–0.3 | 0 | 0 | 0 | - | - | |
0.3–0.4 | 3 | 3 | 0 | 11.0 | 96.2 | |
0.4–0.5 | 15 | 10 | 5 | 2.2 | 99.2 | |
0.5–0.6 | 46 | 33 | 13 | 1.9 | 99.3 | |
0.6–0.7 | 92 | 81 | 11 | 1.4 | 99.5 | |
0.7–0.8 | 323 | 302 | 21 | 1.6 | 99.4 | |
0.8–0.9 | 118 | 82 | 36 | 2.4 | 99.1 | |
>0.90 | 6 | 5 | 1 | 2.8 | 100 | |
Total | 768 | 516 | 87 | - | - | |
Weighted average | - | - | - | 1.8 | 99.4 | |
Black spruce | ||||||
<0.25 | 138 | 0 | 0 | - | - | |
0.25–0.3 | 0 | 0 | 0 | - | - | |
0.3–0.4 | 10 | 10 | 0 | 3.5 | 98.8 | |
0.4–0.5 | 17 | 16 | 1 | 4.5 | 98.4 | |
0.5–0.6 | 80 | 74 | 6 | 1.9 | 99.3 | |
0.6–0.7 | 79 | 72 | 6 | 2.3 | 99.3 | |
0.7–0.8 | 170 | 163 | 7 | 0.7 | 99.8 | |
0.8–0.9 | 260 | 244 | 16 | 0.5 | 99.8 | |
>0.90 | 14 | 13 | 1 | 2.0 | 99.3 | |
Total | 768 | 592 | 31 | - | - | |
Weighted average | - | - | - | 1.1 | 99.6 |
1 Average call rate is 100% minus average number of missing data in %.