Table 4.

Genotyping success rate. Genotyping success rate according to a priori Illumina functionality scores of SNPs for the GoldenGate assay for each of white spruce and black spruce.

Species	Class of functionality scores	Predicted functionality1	Number of SNPs on SNP bead array	Number of valid SNPs detected2	Overall success rate (%)2	Number of monomorphic SNPs	Number of failed SNPs
White spruce
	0.1–0.4	low	18	8	44.4	2	8
	0.4–0.6	medium	71	27	38.0	6	38
	0.6–1.0	high	679	481	70.8	74	124
	Total	-	768	516	-	82	170
	Weighted average	-	-	-	67.2	-	-
Black spruce
	0.1–0.4	low	4	2	50.0	0	2
	0.4–0.6	medium	70	37	52.9	3	30
	0.6–1.0	high	694	553	79.7	34	107
	Total	-	768	592	-	37	139
	Weighted averaged	-	-	-	77.1	-	-

¹According to Illumina OligoDesigner software [29]

²Excluding failed and monomorphic SNPs.