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. 2007 Dec 13;8(12):R265. doi: 10.1186/gb-2007-8-12-r265

Table 2.

The 133 genes of the 'abundant invariome'

Rv Name Avg ppm Stdev Essential
1 Rv3874 lhp 5,414 3,950 -
2 Rv3418c groES 5,189 2,593 In vitro
3 Rv0440 groEL2 4,438 2,385 In vitro
4 Rv3615c Rv3615c 3,887 2,539 In vivo
5 Rv0009 ppiA 3,460 4,587 -
6 Rv3616c Rv3616c 2,619 1,457 In vivo
7 Rv3477 PE31 2,537 1,553 -
8 Rv2244 acpM 2,475 1,304 In vitro
9 Rv3875 esat6 2,472 1,229 -
10 Rv1398c Rv1398c 2,449 1,311 -
11 Rv3648c cspA 2,372 1,149 In vitro
12 Rv2245 kasA 2,236 481 In vitro
13 Rv3614c Rv3614c 2,232 847 In vivo
14 Rv1307 atpH 2,151 1,195 In vitro
15 Rv0667 rpoB 2,105 563 In vitro
16 Rv1388 mihF 2,103 1,013 In vitro
17 Rv0685 tuf 2,100 792 In vitro
18 Rv3583c Rv3583c 2,096 2,027 -
19 Rv3053c nrdH 1,930 1,339 -
20 Rv1133c metE 1,915 323 In vitro
21 Rv1072 Rv1072 1,897 560 -
22 Rv1872c lldD2 1,817 574 -
23 Rv3461c rpmJ 1,814 795 In vitro
24 Rv2457c clpX 1,790 343 In vitro
25 Rv0700 rpsJ 1,693 1,148 In vitro
26 Rv1078 pra 1,643 971 -
27 Rv1298 rpmE 1,529 543 In vitro
28 Rv2840c Rv2840c 1,495 566 -
29 Rv1630 rpsA 1,491 439 In vitro
30 Rv0046c ino1 1,488 620 -
31 Rv1886c fbpB 1,464 1,168 -
32 Rv2196 qcrB 1,455 472 In vitro
33 Rv3443c rplM 1,447 300 In vitro
34 Rv0701 rplC 1,421 880 In vitro
35 Rv0682 rpsL 1,419 576 In vitro
36 Rv3219 whiB1 1,384 795 -
37 Rv0702 rplD 1,364 619 In vitro
38 Rv0289 Rv0289 1,351 845 In vitro
39 Rv2200c ctaC 1,332 1,406 In vitro
40 Rv1980c mpt64 1,316 629 -
41 Rv1306 atpF 1,246 695 In vitro
42 Rv2193 ctaE 1,217 334 In vitro
43 Rv1310 atpD 1,184 412 In vitro
44 Rv1174c Rv1174c 1,165 424 -
45 Rv1308 atpA 1,148 349 In vitro
46 Rv3051c nrdE 1,123 578 In vitro
47 Rv1305 atpE 1,086 696 In vitro
48 Rv0683 rpsG 1,080 541 In vitro
49 Rv1297 rho 1,074 281 In vitro
50 Rv2461c clpP1 1,028 346 -
51 Rv0655 mkl 1,024 385 In vivo
52 Rv3052c nrdI 1,018 551 -
53 Rv3801c fadD32 1,015 209 In vitro
54 Rv0005 gyrB 1,011 684 In vitro
55 Rv0704 rplB 1,011 528 In vitro
56 Rv3412 Rv3412 1,002 141 -
57 Rv0250c Rv0250c 995 439 -
58 Rv2460c clpP2 991 393 In vitro
59 Rv2204c Rv2204c 963 277 -
60 Rv3478 PPE60 957 360 -
61 Rv0703 rplW 956 556 In vitro
62 Rv2094c tatA 949 241 -
63 Rv1303 Rv1303 939 637 In vitro
64 Rv3456c rplQ 937 297 -
65 Rv0719 rplF 925 406 In vitro
66 Rv0684 fusA1 923 367 In vitro
67 Rv2347c Rv2347c 920 447 -
68 Rv0715 rplX 906 342 In vitro
69 Rv1197 Rv1197 906 440 -
70 Rv1479 moxR1 898 162 In vitro
71 Rv0718 rpsH 886 243 In vitro
72 Rv3460c rpsM 882 373 -
73 Rv2194 qcrC 870 194 In vitro
74 Rv2195 qcrA 868 189 In vitro
75 Rv0860 fadB 863 420 -
76 Rv1309 atpG 861 401 In vitro
77 Rv0243 fadA2 859 231 -
78 Rv3248c sahH 850 243 In vitro
79 Rv0020c TB39.8 850 224 -
80 Rv3584 lpqE 845 246 -
81 Rv1793 Rv1793 836 309 -
82 Rv3620c Rv3620c 827 375 -
83 Rv1410c Rv1410c 815 188 In vivo
84 Rv3459c rpsK 809 206 In vitro
85 Rv0483 lprQ 805 341 -
86 Rv3043c ctaD 803 221 In vitro
87 Rv3029c fixA 801 232 In vitro
88 Rv2868c gcpE 799 384 -
89 Rv1304 atpB 796 203 In vivo
90 Rv1642 rpmI 784 388 -
91 Rv1794 Rv1794 781 254 -
92 Rv0288 cfp7 781 286 -
93 Rv3810 pirG 778 131 In vivo
94 Rv1543 Rv1543 770 222 -
95 Rv3680 Rv3680 765 294 -
96 Rv3457c rpoA 760 293 In vitro
97 Rv3045 adhC 756 272 -
98 Rv1792 Rv1792 753 326 -
99 Rv2969c Rv2969c 738 141 In vitro
100 Rv1177 fdxC 736 303 In vitro
101 Rv3867 Rv3867 735 200 -
102 Rv1038c Rv1038c 724 391 -
103 Rv2890c rpsB 715 120 In vitro
104 Rv3224 Rv3224 709 303 -
105 Rv3458c rpsD 707 208 In vitro
106 Rv2785c rpsO 690 316 -
107 Rv2986c hupB 687 255 In vitro
108 Rv0174 mce1F 683 211 -
109 Rv3211 rhlE 676 251 -
110 Rv1436 gap 673 234 In vitro
111 Rv0351 grpE 672 282 In vitro
112 Rv2764c thyA 667 239 -
113 Rv1311 atpC 660 160 In vitro
114 Rv0432 sodC 657 177 -
115 Rv1791 PE19 655 232 -
116 Rv0932c pstS2 652 249 -
117 Rv2971 Rv2971 645 188 In vitro
118 Rv1300 hemK 644 220 In vitro
119 Rv2703 sigA 643 114 In vitro
120 Rv2203 Rv2203 633 196 -
121 Rv0423c thiC 614 149 In vitro
122 Rv2587c secD 602 267 -
123 Rv1887 Rv1887 601 148 -
124 Rv0313 Rv0313 588 136 -
125 Rv0502 Rv0502 559 147 -
126 Rv3841 bfrB 542 107 -
127 Rv2115c Rv2115c 529 106 -
128 Rv3587c Rv3587c 526 68 -
129 Rv2110c prcB 516 151 In vitro
130 Rv1987 Rv1987 495 136 -
131 Rv2454c Rv2454c 489 55 -
132 Rv0125 pepA 483 80 -
133 Rv1324 Rv1324 474 152 -

Using our measure of absolute mRNA levels, we have been able to identify the genes whose level of expression remains consistently high across a variety of growth conditions. These genes remain amongst the top 15% most highly expressed genes across all of the conditions tested. We have termed the genes whose level of expression does not vary greatly as invariant, and, therefore, the subset of genes included in this table is dubbed the 'abundant invariome'.