Table 2.
Rv | Name | Avg ppm | Stdev | Essential | |
1 | Rv3874 | lhp | 5,414 | 3,950 | - |
2 | Rv3418c | groES | 5,189 | 2,593 | In vitro |
3 | Rv0440 | groEL2 | 4,438 | 2,385 | In vitro |
4 | Rv3615c | Rv3615c | 3,887 | 2,539 | In vivo |
5 | Rv0009 | ppiA | 3,460 | 4,587 | - |
6 | Rv3616c | Rv3616c | 2,619 | 1,457 | In vivo |
7 | Rv3477 | PE31 | 2,537 | 1,553 | - |
8 | Rv2244 | acpM | 2,475 | 1,304 | In vitro |
9 | Rv3875 | esat6 | 2,472 | 1,229 | - |
10 | Rv1398c | Rv1398c | 2,449 | 1,311 | - |
11 | Rv3648c | cspA | 2,372 | 1,149 | In vitro |
12 | Rv2245 | kasA | 2,236 | 481 | In vitro |
13 | Rv3614c | Rv3614c | 2,232 | 847 | In vivo |
14 | Rv1307 | atpH | 2,151 | 1,195 | In vitro |
15 | Rv0667 | rpoB | 2,105 | 563 | In vitro |
16 | Rv1388 | mihF | 2,103 | 1,013 | In vitro |
17 | Rv0685 | tuf | 2,100 | 792 | In vitro |
18 | Rv3583c | Rv3583c | 2,096 | 2,027 | - |
19 | Rv3053c | nrdH | 1,930 | 1,339 | - |
20 | Rv1133c | metE | 1,915 | 323 | In vitro |
21 | Rv1072 | Rv1072 | 1,897 | 560 | - |
22 | Rv1872c | lldD2 | 1,817 | 574 | - |
23 | Rv3461c | rpmJ | 1,814 | 795 | In vitro |
24 | Rv2457c | clpX | 1,790 | 343 | In vitro |
25 | Rv0700 | rpsJ | 1,693 | 1,148 | In vitro |
26 | Rv1078 | pra | 1,643 | 971 | - |
27 | Rv1298 | rpmE | 1,529 | 543 | In vitro |
28 | Rv2840c | Rv2840c | 1,495 | 566 | - |
29 | Rv1630 | rpsA | 1,491 | 439 | In vitro |
30 | Rv0046c | ino1 | 1,488 | 620 | - |
31 | Rv1886c | fbpB | 1,464 | 1,168 | - |
32 | Rv2196 | qcrB | 1,455 | 472 | In vitro |
33 | Rv3443c | rplM | 1,447 | 300 | In vitro |
34 | Rv0701 | rplC | 1,421 | 880 | In vitro |
35 | Rv0682 | rpsL | 1,419 | 576 | In vitro |
36 | Rv3219 | whiB1 | 1,384 | 795 | - |
37 | Rv0702 | rplD | 1,364 | 619 | In vitro |
38 | Rv0289 | Rv0289 | 1,351 | 845 | In vitro |
39 | Rv2200c | ctaC | 1,332 | 1,406 | In vitro |
40 | Rv1980c | mpt64 | 1,316 | 629 | - |
41 | Rv1306 | atpF | 1,246 | 695 | In vitro |
42 | Rv2193 | ctaE | 1,217 | 334 | In vitro |
43 | Rv1310 | atpD | 1,184 | 412 | In vitro |
44 | Rv1174c | Rv1174c | 1,165 | 424 | - |
45 | Rv1308 | atpA | 1,148 | 349 | In vitro |
46 | Rv3051c | nrdE | 1,123 | 578 | In vitro |
47 | Rv1305 | atpE | 1,086 | 696 | In vitro |
48 | Rv0683 | rpsG | 1,080 | 541 | In vitro |
49 | Rv1297 | rho | 1,074 | 281 | In vitro |
50 | Rv2461c | clpP1 | 1,028 | 346 | - |
51 | Rv0655 | mkl | 1,024 | 385 | In vivo |
52 | Rv3052c | nrdI | 1,018 | 551 | - |
53 | Rv3801c | fadD32 | 1,015 | 209 | In vitro |
54 | Rv0005 | gyrB | 1,011 | 684 | In vitro |
55 | Rv0704 | rplB | 1,011 | 528 | In vitro |
56 | Rv3412 | Rv3412 | 1,002 | 141 | - |
57 | Rv0250c | Rv0250c | 995 | 439 | - |
58 | Rv2460c | clpP2 | 991 | 393 | In vitro |
59 | Rv2204c | Rv2204c | 963 | 277 | - |
60 | Rv3478 | PPE60 | 957 | 360 | - |
61 | Rv0703 | rplW | 956 | 556 | In vitro |
62 | Rv2094c | tatA | 949 | 241 | - |
63 | Rv1303 | Rv1303 | 939 | 637 | In vitro |
64 | Rv3456c | rplQ | 937 | 297 | - |
65 | Rv0719 | rplF | 925 | 406 | In vitro |
66 | Rv0684 | fusA1 | 923 | 367 | In vitro |
67 | Rv2347c | Rv2347c | 920 | 447 | - |
68 | Rv0715 | rplX | 906 | 342 | In vitro |
69 | Rv1197 | Rv1197 | 906 | 440 | - |
70 | Rv1479 | moxR1 | 898 | 162 | In vitro |
71 | Rv0718 | rpsH | 886 | 243 | In vitro |
72 | Rv3460c | rpsM | 882 | 373 | - |
73 | Rv2194 | qcrC | 870 | 194 | In vitro |
74 | Rv2195 | qcrA | 868 | 189 | In vitro |
75 | Rv0860 | fadB | 863 | 420 | - |
76 | Rv1309 | atpG | 861 | 401 | In vitro |
77 | Rv0243 | fadA2 | 859 | 231 | - |
78 | Rv3248c | sahH | 850 | 243 | In vitro |
79 | Rv0020c | TB39.8 | 850 | 224 | - |
80 | Rv3584 | lpqE | 845 | 246 | - |
81 | Rv1793 | Rv1793 | 836 | 309 | - |
82 | Rv3620c | Rv3620c | 827 | 375 | - |
83 | Rv1410c | Rv1410c | 815 | 188 | In vivo |
84 | Rv3459c | rpsK | 809 | 206 | In vitro |
85 | Rv0483 | lprQ | 805 | 341 | - |
86 | Rv3043c | ctaD | 803 | 221 | In vitro |
87 | Rv3029c | fixA | 801 | 232 | In vitro |
88 | Rv2868c | gcpE | 799 | 384 | - |
89 | Rv1304 | atpB | 796 | 203 | In vivo |
90 | Rv1642 | rpmI | 784 | 388 | - |
91 | Rv1794 | Rv1794 | 781 | 254 | - |
92 | Rv0288 | cfp7 | 781 | 286 | - |
93 | Rv3810 | pirG | 778 | 131 | In vivo |
94 | Rv1543 | Rv1543 | 770 | 222 | - |
95 | Rv3680 | Rv3680 | 765 | 294 | - |
96 | Rv3457c | rpoA | 760 | 293 | In vitro |
97 | Rv3045 | adhC | 756 | 272 | - |
98 | Rv1792 | Rv1792 | 753 | 326 | - |
99 | Rv2969c | Rv2969c | 738 | 141 | In vitro |
100 | Rv1177 | fdxC | 736 | 303 | In vitro |
101 | Rv3867 | Rv3867 | 735 | 200 | - |
102 | Rv1038c | Rv1038c | 724 | 391 | - |
103 | Rv2890c | rpsB | 715 | 120 | In vitro |
104 | Rv3224 | Rv3224 | 709 | 303 | - |
105 | Rv3458c | rpsD | 707 | 208 | In vitro |
106 | Rv2785c | rpsO | 690 | 316 | - |
107 | Rv2986c | hupB | 687 | 255 | In vitro |
108 | Rv0174 | mce1F | 683 | 211 | - |
109 | Rv3211 | rhlE | 676 | 251 | - |
110 | Rv1436 | gap | 673 | 234 | In vitro |
111 | Rv0351 | grpE | 672 | 282 | In vitro |
112 | Rv2764c | thyA | 667 | 239 | - |
113 | Rv1311 | atpC | 660 | 160 | In vitro |
114 | Rv0432 | sodC | 657 | 177 | - |
115 | Rv1791 | PE19 | 655 | 232 | - |
116 | Rv0932c | pstS2 | 652 | 249 | - |
117 | Rv2971 | Rv2971 | 645 | 188 | In vitro |
118 | Rv1300 | hemK | 644 | 220 | In vitro |
119 | Rv2703 | sigA | 643 | 114 | In vitro |
120 | Rv2203 | Rv2203 | 633 | 196 | - |
121 | Rv0423c | thiC | 614 | 149 | In vitro |
122 | Rv2587c | secD | 602 | 267 | - |
123 | Rv1887 | Rv1887 | 601 | 148 | - |
124 | Rv0313 | Rv0313 | 588 | 136 | - |
125 | Rv0502 | Rv0502 | 559 | 147 | - |
126 | Rv3841 | bfrB | 542 | 107 | - |
127 | Rv2115c | Rv2115c | 529 | 106 | - |
128 | Rv3587c | Rv3587c | 526 | 68 | - |
129 | Rv2110c | prcB | 516 | 151 | In vitro |
130 | Rv1987 | Rv1987 | 495 | 136 | - |
131 | Rv2454c | Rv2454c | 489 | 55 | - |
132 | Rv0125 | pepA | 483 | 80 | - |
133 | Rv1324 | Rv1324 | 474 | 152 | - |
Using our measure of absolute mRNA levels, we have been able to identify the genes whose level of expression remains consistently high across a variety of growth conditions. These genes remain amongst the top 15% most highly expressed genes across all of the conditions tested. We have termed the genes whose level of expression does not vary greatly as invariant, and, therefore, the subset of genes included in this table is dubbed the 'abundant invariome'.