Table 2.
Repartition of the clusters and motifs
| Genus | Bacteria | Genes | Specific sub- groups | % | Specific motifs | % | |
|---|---|---|---|---|---|---|---|
| Bacillus | BAC | 7 | 7450 | 1581 | 79.0 | 5652 | 22.5 |
| Carboxydothermus | CAB | 1 | 7 | 2 | 100.0 | 0 | 0.0 |
| Clostridium | CLO | 3 | 271 | 46 | 53.5 | 11 | 0.4 |
| Enterococcus | ENT | 1 | 11 | 1 | 33.3 | 0 | 0.0 |
| Geobacillus | GEO | 1 | 19 | 4 | 100.0 | 0 | 0.0 |
| Lactobacillus | LAB | 3 | 299 | 24 | 25.5 | 13 | 0.4 |
| Lactococcus | LAC | 1 | 45 | 7 | 100.0 | 0 | 0.0 |
| Listeria | LIS | 2 | 51 | 9 | 64.3 | 0 | 0.0 |
| Mycoplasma | MYC | 9 | 298 | 40 | 58.0 | 24 | 0.8 |
| Oceanobacillus | OCB | 1 | 6 | 1 | 50.0 | 0 | 0.0 |
| Phytoplasma | OYP | 1 | 92 | 18 | 85.7 | 0 | 0.0 |
| Staphylococcus | STA | 4 | 3435 | 555 | 60.5 | 1516 | 8.3 |
| Streptococcus | STR | 5 | 1573 | 196 | 46.3 | 184 | 1.9 |
| Thermoanaerobacter | TAB | 1 | 59 | 10 | 100.0 | 0 | 0.0 |
Genuses are listed followed by the three-letter abbreviation used for cluster names. Bacteria: number of bacteria species used for the given genus; Genes: total number of genes reported in the bacteria of the given genus; Specific subgroups: number of subgroups for which no homologous subgroup is found in other genuses; Specific motifs: number of hexameric motif matrices found to bind exclusively in a given genus. Percentages are given based on the total number of subgroups, respectively motifs, found in a given genus.