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. Author manuscript; available in PMC: 2009 Feb 1.
Published in final edited form as: Neurobiol Dis. 2007 Sep 29;29(2):306–315. doi: 10.1016/j.nbd.2007.09.006

Table 4.

CLN5 primer sequence information

Name Sequence Location (bp)*
5′UTR-F1 5′-AGT TCT GCG CAT GCT CGG CTC G-3′ 5′UTR
E1F2 5′-CGC ACT GCT CTG GCT GGC GG-3′ exon1 (96-115)
E1F3 5′-GTG GCC GGT GCC CTA CAA-3′ exon1 (162-179)
I1R222 5′-ACA GTC ACT TTG GAA CTG GCT CAA CG-3′ intron1
I1F11 5′-TAT AGA CTG TGT GCT CAG TC-3′ intron1
E2F1 5′-GAT CCT TAT TGT CAA GCT A-3′ exon2 (205-223)
E2F2 5′-GAC CTC CTG GGA CAC TTG-3′ exon2 (328-345)
E2R2 5′-AAG TGT CCC AGG AGG TC-3′ exon2 (328-344)
I2R4 5′-TTG GTG TTC CTC TTC AGT TCA-3′ intron2
I2R2 5′-CAG GCC CTG GGC ATG AAG TGA C-3′ intron2
I2F3 5′-ATG AGG GCA GGG AGT TAG AG-3′ intron2
E3F1 5′-ATG CAT GAT GCC ATT GGA TT-3′ exon3 (352-371)
E3R2 5′-CTA GAA CTA ACG TCC CAT TTT CCT-3′ exon3 (533-556)
I3R285 5'-CAG AGA ACA AAC TAG TGG TCA CC-3′ intron3
I3F3 5′-TCA GAG GTA TCT TGT GCC TT-3′ intron3
E4F1 5′-GCA TGT TTA ACA AAA TGG CAA-3′ exon4 (575-595)
E4R3 5′-GAA CTC TCT GTG TAT AAC CAC-3′ exon4 (949-969)
3′UTR-R1 5′-ACT GAT GTG CTG GTA GAA AGA A-3′ 3′UTR
*

Primer position based on the ovine CLN5 sequence submitted to Genbank (accession number NM_001082595)