Table 2.
Modeler objective scores for Type 3 IgNAR positions Trp31 and Phe96
The 10 best scoring models for each modeler run, as described in Materials and Methods. White cells with black text have the side chain directed out away from protein core; black cells with white text have the side chain directed into protein core; gray cells with white text have median exposure to solvent by visual inspection. Numbers are the calculated approximate exposure (Å2) of the side chain atoms to solvent in Å2. MOD = modeler objective energy score. pE (ave) is the average pseudoenergy (~ΔG) and Z is the Z-score of the model calculated in Prosa 3003 for model validation and assessment.