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. 2005 May;14(5):1253–1265. doi: 10.1110/ps.04956305

Table 1.

Asymmetrical clusters in the U10

Cluster PMF difference (kcal/mol) Gly/Pro preference % Remarks
Um 0.95 Gly 6 0.19 C-capping helix
Un 0.46 Gly 6 0.13 C-capping helix
Uo 0.23 Gly 5, 6; Pro 6 0.05 helix + loop + helix
Up 0.41 Pro 3, 5 0.11 N-capping helix
Uq 0.39 Pro 5 0.04 strand + 310-helix

Column 1 is the name of the cluster described in the text. Column 2 is PMF difference, which indicates the difference in PMF value between the center (v1,v2,v3) of each cluster and that at the opposite position (v1,v2,v3) on v2. Column 3 is the position where Gly or Pro has a preference of 1.0 or more. Column 4 is Pall for each cluster. Structures picked from the asymmetrical clusters in U10 are shown in Figure 1A.