Table 2.
Sequence families and structures investigated in this work
Protein family | COG # | # Seqa | PSZb | # PMsc | Structure(s) investigated |
Dihydroorotase | 0044 | 69 | −1.8 | 7 | 1j79 |
Enolase | 0148 | 73 | −1.8 | 12 | (see Table 3) |
Triosephosphate isomerase | 0149 | 69 | −1.5 | 8 | (see Table 1) |
Transaldolase | 0176 | 64 | −1.5 | 7 | 1onr |
Fructose-bisP aldolase | 0191 | 71 | −2.0 | 6 | 1dos |
Deoxyribose-P aldolase | 0274 | 44 | −2.0 | 6 | 1rvg |
Thiamine-P synthetase | 0352 | 60 | −1.5 | 3 | 2tps |
Methylenetetrahydrofolate reductase | 0685 | 51 | −2.0 | 6 | 1b5t |
a Number of sequences in the alignment.
b Phylogenetic similarity z-score threshold used in identification of the phylogenetic motifs.
c Number of phylogenetic motifs identified.