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. 2005 Oct;14(10):2499–2514. doi: 10.1110/ps.041280705

Table 1.

Data from the 60-nsec control run of the WT, the H(H58)A, the H(H58)W, and the S(H52)A mutant of FITC-E2

WT H(H58)A H(H58)W S(H52)A
Cα-RMSD (Å ) 2.5 ± 0.2 3.4 ± 0.3 3.2 ± 0.2 3.1 ± 0.2
rFA (Å ) 42.6 ± 0.7 42.5 ± 0.6 41.2 ± 0.6 42.7 ± 0.6
dcm (Å ) 5.3 ± 0.3 5.2 ± 0.3 5.1 ± 0.3 5.4 ± 0.2
Qnative 0.91 ± 0.05 0.97 ± 0.02 0.93 ± 0.03 0.82 ± 0.03
EIE (kcal/mol) −48.7 ± 4.6 −49.9 ± 4.2 −50.7 ± 3.5 −50.6 ± 3.8

All values were averaged over the second third of the control run. rFA is the distance between the two atoms pulled apart in the forced unbinding simulations; dcm is the distance between the center of mass of fluorescein and the binding pocket; Qnative is the fraction of native antibody–fluorescein contacts; EIE is the effective antibody-fluorescein interaction energy (see Materials and Methods for the exact definitions).