Table 1.
Data from the 60-nsec control run of the WT, the H(H58)A, the H(H58)W, and the S(H52)A mutant of FITC-E2
| WT | H(H58)A | H(H58)W | S(H52)A | |
| Cα-RMSD (Å ) | 2.5 ± 0.2 | 3.4 ± 0.3 | 3.2 ± 0.2 | 3.1 ± 0.2 |
| rFA (Å ) | 42.6 ± 0.7 | 42.5 ± 0.6 | 41.2 ± 0.6 | 42.7 ± 0.6 |
| dcm (Å ) | 5.3 ± 0.3 | 5.2 ± 0.3 | 5.1 ± 0.3 | 5.4 ± 0.2 |
| Qnative | 0.91 ± 0.05 | 0.97 ± 0.02 | 0.93 ± 0.03 | 0.82 ± 0.03 |
| EIE (kcal/mol) | −48.7 ± 4.6 | −49.9 ± 4.2 | −50.7 ± 3.5 | −50.6 ± 3.8 |
All values were averaged over the second third of the control run. rFA is the distance between the two atoms pulled apart in the forced unbinding simulations; dcm is the distance between the center of mass of fluorescein and the binding pocket; Qnative is the fraction of native antibody–fluorescein contacts; EIE is the effective antibody-fluorescein interaction energy (see Materials and Methods for the exact definitions).