Table 2.
GST crystallographic complexes used in testing the minimal rotation hypothesis
Best ligand RMSD (Å) | |||||||
No. | Binding | PDB code | Ligand name | No. non-H atoms | Resolution (Å) | Flexible docking | Rigid docking |
1 | B | 10gs | Benzylcysteine phenylglycine | 33 | 2.2 | 0.36 | 0.36 |
2 | B | 12gs | S-Nonyl-cysteine | 29 | 2.1 | 0.36 | 0.62 |
3 | X | 13gs | Sulfasalazine | 28 | 1.9 | 1.78 | 1.78 |
4 | B | 18gs | 1-(S-Glutathionyl)-2,4-dinitrobenzene | 32 | 1.9 | 0.61 | 0.61 |
5 | B | 1aqv | P-Bromobenzylglutathione | 28 | 1.9 | 0.37 | 0.37 |
6 | P | 1aqw | Glutathione | 20 | 1.8 | 0.46 | 0.54 |
7 | B | 1aqx | S-(2,3,6-Trinitrophenyl)cysteine | 35 | 2.0 | 0.78 | 0.93 |
8 | B | 1pgt | S-Hexylglutathione | 26 | 1.8 | 0.53 | 0.73 |
9 | X | 20gs | Cibacron blue | 22 | 2.5 | 0.52 | — |
10 | X | 2gss | Ethacrynic acid | 19 | 1.9 | 2.48 | — |
11 | B | 2pgt | (9R,10R)-9-(S-Glutathionyl)-10-hydroxy9,10dihydrophenanthrene | 35 | 1.9 | 0.26 | 1.10 |
12 | B | 3gss | Ethacrynic acid-glutathione conjugate | 39 | 1.9 | 0.52 | 0.52 |
13 | B | 3pgt | Glutathione conjugate of (+)-Anti-BPDE | 43 | 2.1 | 0.59 | — |
The second column denotes whether the ligand binds in the glutathione/peptidyl (“P”) binding site, the hydrophobic/xenobiotic (“X”) binding site, or extends into both (“B”) sites.