Table 3.
Genes encoding up regulated transcription factors that changed their expression upon different temperature and light treatments
| AGI-code and Description | Control | Cold/Light | Cold/Dark | Dark |
| At2g23340 AP2 domain transcription factor, putative | 0.9 ± 0.1 | 8.9 ± 1.1* (a) | 2.8 ± 0.9 | 1.0 ± 0.2 |
| At5g63790 No apical meristem (NAM) protein, NAC-domain protein, (ANAC102) | 1.2 ± 0.1 | 4.1 ± 0.4* | 1.5 ± 0.6 | 0.9 ± 0.1 |
| At2g47890 CONSTANS B-box like zinc finger family protein | 1.1 ± 0.1 | 4.0 ± 0.5* | 1.6 ± 0.1 | 1.0 ± 0.2 |
| At4g08150 KNAT1 homeobox-related protein | 1.0 ± 0.1 | 3.9 ± 0.5* | 1.9 ± 0.6 | 0.7 ± 0.1 |
| At5g05410 DRE binding protein (DREB2A) | 1.0 ± 0.1 | 3.6 ± 0.3* | 2.0 ± 0.5 | 0.9 ± 0.2 |
| At5g04340 C2H2 zinc finger transcription factor – related | 1.0 ± 0.1 | 3.3 ± 0.3* | 1.9 ± 0.1 | 1.0 ± 0.1 |
| At1g06040 zinc finger transcription factor STO | 1.5 ± 0.2 | 3.3 ± 0.4* | 1.7 ± 0.3 | 0.8 ± 0.2 |
| At4g18390 TCP family transcription factor, teosinte branched1 protein | 1.0 ± 0.1 | 3.0 ± 0.3* | 1.5 ± 0.1 | 0.6 ± 0.1 |
| At1g51700 Dof zinc finger protein ADOF1 | 1.0 ± 0.1 | 2.4 ± 0.5* | 1.1 ± 0.2 | 0.8 ± 0.1 |
| At4g34590 bZIP family transcription factor, ATB2/bZip11 | 1.1 ± 0.1 | 2.4 ± 0.6* | 1.1 ± 0.1 | 0.9 ± 0.1 |
| At5g54470 CONSTANS B-box zinc finger | 0.9 ± 0.1 | 2.3 ± 0.2* | 1.3 ± 0.3 | 1.0 ± 0.2 |
| At5g44190 myb family transcription factor, (GLK2) | 1.1 ± 0.1 | 2.2 ± 0.4* | 1.1 ± 0.1 | 1.0 ± 0.3 |
| At4g23750 AP2 domain transcription factor, (ERF) | 0.9 ± 0.1 | 2.0 ± 0.3* | 1.3 ± 0.1 | 2.0 ± 0.9 |
| At4g25490 C-repeat/DRE binding factor 1 (CBF1) (DREB1B) | 1.1 ± 0.1 | 8.3 ± 2.7 | 4.0 ± 0.8 | 1.0 ± 0.2 |
| At1g27730 salt-tolerance zinc finger protein, C2H2-type, ZAT10 | 1.1 ± 0.2 | 6.2 ± 3.7 | 7.2 ± 1.2 | 1.1 ± 0.7 |
| At5g57660 CONSTANS B-box like zinc finger family protein (COL5) | 1.4 ± 0.2 | 5.1 ± 1.0 | 4.1 ± 0.7 | 4.3 ± 0.5 |
| At2g46830 MYB-related transcription factor (CCA1) | 1.0 ± 0.1 | 3.8 ± 0.4 | 3.7 ± 2.1 | 1.0 ± 0.2 |
| At5g59820 zinc finger protein ZAT12 | 1.0 ± 0.1 | 3.7 ± 1.1 | 2.3 ± 0.5 | 1.1 ± 0.1 |
| At1g49720 abscisic acid responsive elements-binding factor, ABF1/AtbZip35 | 1.0 ± 0.1 | 3.4 ± 0.5 | 2.1 ± 0.7 | 0.7 ± 0.1 |
| At4g28140 AP2 domain transcription factor, RAP2.4 | 0.9 ± 0.1 | 3.2 ± 0.6 | 1.7 ± 1.3 | 1.0 ± 0.1 |
| At1g13260 AP2 domain transcription factor, putative (RAV1) | 1.1 ± 0.1 | 3.1 ± 1.0 | 4.2 ± 0.8 | 0.9 ± 0.1 |
| At5g08790 No apical meristem (NAM) protein family, NAC-domain protein (ATAF2) | 1.2 ± 0.2 | 2.9 ± 0.5 | 1.3 ± 0.6 | 1.0 ± 0.4 |
| At5g37260 MYB family transcription factor | 0.9 ± 0.1 | 2.9 ± 0.4 | 4.4 ± 2.2 | 1.2 ± 0.1 |
| At4g12040 expressed protein zinc finger protein, AN1-like | 1.0 ± 0.1 | 2.8 ± 0.3 | 3.4 ± 0.5 | 2.2 ± 0.3 |
| At2g45820 remorin, a non-specific DNA binding protein | 1.3 ± 0.2 | 2.7 ± 0.5 | 1.9 ± 0.6 | 1.7 ± 0.2 |
| At3g52800 zinc finger – like protein zinc finger protein, AN1-like | 1.0 ± 0.1 | 2.6 ± 0.7 | 3.6 ± 0.8 | 1.6 ± 0.5 |
| At2g22430 homeobox-leucine zipper protein ATHB-6 (HD-Zip) | 1.6 ± 0.2 | 2.1 ± 0.5 | 2.1 ± 0.5 | 1.6 ± 0.3 |
| At5g02840 myb family transcription factor (SANT-domain) | 1.2 ± 0.1 | 2.1 ± 0.3 | 1.7 ± 0.4 | 2.0 ± 0.3 |
| At4g32800 AP2 domain transcription factor TINY | 1.0 ± 0.2 | 2.1 ± 0.1 | 2.3 ± 0.8 | 0.7 ± 0.1 |
| At5g52510 scarecrow-like transcription factor 8 (SCL8) | 1.1 ± 0.1 | 2.0 ± 0.2 | 3.6 ± 1.1 | 1.1 ± 0.2 |
| At3g55980 zinc finger transcription factor (PEI1), CCCH-type | 0.9 ± 0.1 | 1.2 ± 0.7 | 3.8 ± 0.4* | 1.1 ± 1.2 |
| At3g07650 CONSTANS B-box like zinc finger (COL9) | 1.0 ± 0.1 | 1.9 ± 0.3 | 3.5 ± 0.5* | 1.5 ± 0.3 |
| At2g21650 myb family transcription factor | 1.0 ± 0.1 | 1.3 ± 0.1 | 2.2 ± 1.5 | 0.9 ± 0.2 |
| At5g58900 myb family transcription factor (SANT Domain) | 1.1 ± 0.1 | 1.6 ± 0.2 | 2.2 ± 0.2 | 0.9 ± 0.2 |
| At2g03340 WRKY family transcription factor | 1.1 ± 0.1 | 1.7 ± 0.2 | 2.1 ± 0.9 | 0.4 ± 0.1 |
| At3g61260 DNA-binding protein-related DNA-binding protein (dbp) | 1.1 ± 0.1 | 1.6 ± 0.4 | 2.1 ± 0.5 | 5.2 ± 0.9 |
| At3g16770 AP2 domain transcription factor RAP2.3 | 1.4 ± 0.2 | 1.7 ± 0.3 | 1.7 ± 0.3 | 8.5 ± 4.1 |
| At2g25900 CCCH-type zinc finger | 1.3 ± 0.1 | 0.8 ± 0.1 | 1.1 ± 0.3 | 5.1 ± 1.0 |
| At5g07100 WRKY family transcription factor SPF1 | 1.2 ± 0.1 | 1.0 ± 0.1 | 1.7 ± 0.5 | 3.6 ± 0.5 |
| At1g02340 bHLH protein (HFR1) | 1.3 ± 0.2 | 1.6 ± 0.2 | 1.4 ± 0.1 | 2.8 ± 0.7 |
| At1g34370 zinc finger protein-related similar, C2H2-type | 1.0 ± 0.1 | 1.2 ± 0.2 | 0.8 ± 0.1 | 2.6 ± 0.2 |
| At2g42280 bHLH protein family | 1.0 ± 0.1 | 1.0 ± 0.1 | 1.1 ± 0.1 | 2.5 ± 0.1 |
| At3g59060 bHLH protein family | 1.2 ± 0.1 | 0.7 ± 0.2 | 1.1 ± 0.2 | 2.3 ± 0.3 |
| At5g56140 KH domain protein | 1.1 ± 0.1 | 1.1 ± 0.1 | 1.1 ± 0.1 | 2.3 ± 0.2 |
| At5g11260 bZIP protein HY5 identical to HY5 | 0.8 ± 0.1 | 1.5 ± 0.2 | 1.3 ± 0.1 | 2.1 ± 0.2 |
| At4g17460 homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) | 1.2 ± 0.1 | 0.8 ± 0.1 | 0.9 ± 0.1 | 2.1 ± 0.3 |
| At1g13450 DNA binding protein GT-1-related | 1.1 ± 0.1 | 0.7 ± 0.1 | 0.9 ± 0.1 | 2.1 ± 0.1 |
| At5g37720 RNA and export factor binding protein, putative transcriptional coactivator ALY, Mus musculus | 1.2 ± 0.1 | 1.2 ± 0.1 | 1.0 ± 0.1 | 2.0 ± 0.1 |
Control represents internal variation (technical and/or biological) of different leaf samples from growth condition. Value ± s.e. indicates expression ratio of Treatment/Control after normalization ± standard error of the mean (n = 3–4). Genes in the table are listed according to decreasing expression ratios in different condition. The big groups of transcription factors that are up regulated at a given condition are underlined. (a)Genes that differ significantly (Students t test p-value less than 0.05) in their expression between the Cold/Light and Cold/Dark condition is marked with an asterisk (*). Values in bold indicate the quality control of gene expression (a statistical test of differential expression for a specific condition, Students t test p-value less than 0.05).