Table 1.
Genes differentially expressed between iron near-isogenic lines that cluster with other stress induced genes.
| Clone ID | Federated Ratio | P Value | Associated TIGR TC | UNIREF 100 | TBLASTX UniRef DB Annotation | Cluster Members | UniRef Blast E-Value |
| Gm-c1004-1674 | 0.296 | 0.2128 | GmTC206003 | Q9SJQ9 | Fructose-Bisphosphate Aldoslase | 1Fe, 1PS, 1ST | 1.00E-177 |
| Gm-c1028-6047 | 2.176 | 0.0012 | GmTC220166 | Q9M590 | Serine/Threonine Protein Kinase | 3Fe, 118PS, 107ST | 1.00E-103 |
| Gm-c1028-8683 | 2.204 | 0.0417 | GmTC223013 | Q9XHP4 | Peroxissomal Copper Containing Oxidase | 1Fe, 2PS, 1ST | 1.00E-118 |
| Gm-c1028-8247 | 2.409 | 0.0391 | GmTC225799 | Q8H0T8 | Initiation Factor eIF-4 gamma | 3Fe, 118PS, 107ST | 0 |
| Gm-c1004-8188 | 2.412 | 0.0366 | GmTC224861 | Q9XEE6 | Zinc Finger Protein, Cys3His | 1Fe, 3ST | 1.00E-164 |
| Gm-c1028-6637 | 2.536 | 0.1137 | GmTC219139 | Q9ZT44 | Zinc Finger Protein, H2 | 2Fe, 6PS, 11ST | 1.00E-55 |
| Gm-c1028-5360 | 2.701 | 0.0036 | AW831928 | Q9C9T6 | Zinc Finger Protein | 2Fe, 6PS, 11ST | 2.00E-19 |
| Gm-c1009-2360 | 2.597 | 0.0262 | GmTC208403 | Q9LDA7 | Phosphatase type 2C/ | 1Fe, 5PS, 6ST/1Fe, 9PS, 5ST | 1.00E-107 |
| Gm-c1004-7092 | 2.639 | 0.0208 | GmTC225579 | Q56E95 | Ethylene Responsive Transcription Factor | 2Fe, 8PS, 33ST | 8e-36 |
| Gm-c1009-2900 | 2.936 | 0.0078 | GmTC214121 | Q9FE67 | Ethylene Responsive Transcription Factor/Ubiquitin | 2Fe, 8PS, 33ST/2Fe | 1.00E-24/2.00E-64 |
| Gm-c1028-6890 | 5.219 | 0.0163 | GmTC214518 | Q49976 | Ubiquitin | 2Fe | 2.00E-63 |
| Gm-c1028-8604 | 2.821 | 0.0935 | GmTC228370 | Q9AXD7 | Response Regulator Protein (ARR) | 1Fe, 1PS, 7ST | 1.00E-49 |
| Gm-c1028-8161 | 2.827 | 0.0246 | GmTC205220 | Q69IX0 | RER1A | 1Fe, 1PS | 1.00E-67 |
| Gm-c1028-6556 | 2.891 | 0.0340 | GmTC228039 | Q75HJ3 | Chaperonin Protein | 1Fe, 1PS | 1.00E-136 |
| Gm-c1013-3137 | 3.01 | 0.0083 | GmTC228924 | Q6J4N8 | RuBisCo Activase Protein | 1Fe, 1PS, 1ST | 2.00E-95 |
| Gm-c1013-2333 | 3.117 | 0.0026 | GmTC209508 | Q2V2S5 | SNARE Protein | 2Fe, 31PS, 15ST | 1.00E-143 |
| Gm-c1028-1706 | 3.138 | 0.0091 | GmTC230619 | Q9SKM5 | RNA Methyltransferase | 1Fe, 1PS | 2.00E-47 |
| Gm-c1028-2326 | 3.156 | 0.0361 | AW704123 | Q9ZNZ6 | Peroxidase Precursor | 1Fe, 22PS, 5ST | 1.00E-26 |
| Gm-c1028-1633 | 3.214 | 0.0713 | GmTC218842 | Q9SPJ5 | Dihydroflavonol 4 Reductase | 1Fe, 4PS, 3ST | 2.00E-66 |
| Gm-c1028-5349 | 3.583 | 0.0018 | GmTC204156 | Q9M6R1 | Heat Shock Protein Hsp70 | 1Fe, 2ST/1Fe, 2PS, 1ST | 1.00E-115 |
| Gm-c1004-6630 | 3.593 | 0.1557 | GmTC206397 | O80567 | RNA Binding Protein | 1Fe, 1PS, 1ST | 1.00E-48 |
| Gm-c1028-2676 | 3.776 | 0.0542 | GmC225028 | Q946J9 | Aquaporin Protein PIP1 | 2Fe, 31PS, 15ST | 1.00E-153 |
| Gm-c1028-4123 | 5.576 | 0.027 | AW666293 | No UniRef | No UniRef Hit E < 10E-4 | 1Fe, 2PS, 2ST | N/A |
| Gm-c1028-9215 | 5.174 | 0.1109 | GmTC216364 | Q9MA17 | Map Protein Kinase | 3Fe, 118PS, 107ST | 0 |
The clone ID identifies the specific clone spotted on the microarray. The Federated Ratio is the fold change between the two near isogenic lines. Fold changes above 2 represent genes over-expressed in the iron inefficient plant compared to the iron efficient plant while fold changes below 0.5 represent genes under-expressed in the iron inefficient plant compared to the iron efficient plant. The TIGR TC represents the tentative consensus sequence to which the clone ID belongs according to TIGR. The UNIPROT annotation is the identified function of genes showing high similarity to the sequence of the TIGR TC. Cluster members indicate the number of genes induced by iron deficiency (Fe), phosphorus depravation (PS), or general abiotic stress (ST) that share high sequence similarity to form a unique cluster grouping. The E-value is the association of the annotation to the TIGR TC sequence.