Table 1.

Counts of SNPs in Different MAF Categories in the HapMap Data Set

Population	MAFa	Type of SNP
		Intronic	S	B	Pos.D.	Prob.D.
CEPH	0–0.025	38755	5626	4675	1584	987
CEPH	0.025–0.05	5778	571	370	109	51
CEPH	0.05–0.075	5580	462	403	82	40
CEPH	0.075–0.1	5262	458	317	74	38
CEPH	0.1–0.125	5402	414	300	52	34
CEPH	0.125–1.15	5217	355	280	57	27
CEPH	0.15–0.175	5182	332	272	48	32
CEPH	0.175–0.2	5320	341	214	43	33
CEPH	0.2–0.225	5293	286	235	55	34
CEPH	0.225–0.25	5082	296	206	37	26
CEPH	0.25–0.275	5181	297	225	54	22
CEPH	0.275–0.3	5097	268	237	45	24
CEPH	0.3–0.325	5213	299	210	35	16
CEPH	0.325–0.35	4981	304	236	36	19
CEPH	0.35–0.375	5124	243	197	34	20
CEPH	0.375–0.4	5054	277	199	36	19
CEPH	0.4–0.425	5038	251	164	38	25
CEPH	0.425–0.45	5181	240	171	46	26
CEPH	0.45–0.475	5190	271	200	26	26
CEPH	0.475–0.5	5155	223	212	31	13
	Total	138085	11814	9323	2522	1512
		Type of SNP
Population	MAFa	Intronic	S	B	Pos.D.	Prob.D.
Yoruba	0–0.025	33463	4650	4230	1475	930
Yoruba	0.025–0.05	7351	745	512	135	72
Yoruba	0.05–0.075	6903	618	447	92	57
Yoruba	0.075–0.1	6521	542	369	84	54
Yoruba	0.1–0.125	6404	554	309	67	31
Yoruba	0.125–1.15	5950	498	368	70	34
Yoruba	0.15–0.175	5952	400	312	74	44
Yoruba	0.175–0.2	5804	417	263	42	20
Yoruba	0.2–0.225	5397	356	212	42	26
Yoruba	0.225–0.25	5311	389	232	35	28
Yoruba	0.25–0.275	5174	338	221	55	20
Yoruba	0.275–0.3	4996	317	211	33	30
Yoruba	0.3–0.325	4928	282	218	32	21
Yoruba	0.325–0.35	4757	247	196	28	13
Yoruba	0.35–0.375	4527	244	178	33	24
Yoruba	0.375–0.4	4614	236	187	36	22
Yoruba	0.4–0.425	4560	266	175	29	19
Yoruba	0.425–0.45	4532	262	177	36	23
Yoruba	0.45–0.475	4352	263	166	40	16
Yoruba	0.475–0.5	4548	226	169	27	15
	Total	136044	11850	9152	2465	1499

S, synonymous; B, benign; Pos.D., possibly damaging; and Prob.D., probably damaging SNPs.

^aIn each MAF category, the upper limit was included and the lower limit was excluded, e.g., 0.45–0.475 includes all SNPs with 0.45 < MAF ≤ 0.475.