Table 1.

Accuracy in Predicting HLA Alleles in the Training Data

Locus	Accuracy at Four-Digit Resolutiona (%) (Call Rate %)				Accuracy at Two-Digit Resolutiona (%) (Call Rate %)
	CTb = 0.0	CT = 0.9	CT = 0.0	CT = 0.9	CT = 0.0	CT = 0.9	CT = 0.0	CT = 0.9
	YRI	YRI	CEU	CEU	YRI	YRI	CEU	CEU
HLA-A	96	98 (91)	98	99 (92)	96	95 (100)	96	99 (93)
HLA-C	97	97 (100)	98	96 (100)	98	97 (100)	99	96 (100)
HLA-B	91	100 (62)	96	95 (99)	88	100 (65)	97	96 (100)
HLA-DRB1	92	90 (100)	91	89 (99)	94	99 (88)	97	95 (100)
HLA-DQA1	94	94 (100)	99	99 (100)	96	96 (100)	99	98 (100)
HLA-DQB1	98	100 (98)	99	99 (100)	100	100 (100)	99	99 (100)

^aExcluding singleton HLA alleles.

^bCall threshold.