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. 2008 Jan 7;9:5. doi: 10.1186/1471-2164-9-5

Table 3.

Specific sequences and contaminants in turkey astrovirus and human rhinovirus 16 assemblies.

TURKEY ASTROVIRUS
Contig Length Sequence reads Best Hit

689 2 Avian
501 2 None
423 2 None
518 2 None
259 2 None
1267 28 Turkey astrovirus
2785 67 Turkey astrovirus
1692 43 Turkey astrovirus
Total Sequences 148
Percent Specific 93.24%
Genome coverage 90.84%
HUMAN RHINOVIRUS 16

Contig Length Sequence Reads Best Hit

265 8 Mammalian
537 2 Mammalian
981 27 Mammalian
1091 7 Bacterial
1297 10 Bacterial
553 1 None
385 1 None
342 3 None
815 32 None
909 18 None
676 8 None
487 9 None
4823 105 Human Rhinovirus 16
1685 90 Human Rhinovirus 16
Total Sequences 321
Percent Specific 60.75%
Genome coverage 90.23%

Sequences were analyzed against a non redundant database using a blastn algorithm. Viral specific sequences were identified as matching the reference genome with a blastn cut off below 10-25. Non-specific (non-viral contaminant) sequences were identified if they had a cut off value below 10-10, while None means that no blastn results were found below the 10-10 cut off value.

HHS Vulnerability Disclosure