Table 3.
Specific sequences and contaminants in turkey astrovirus and human rhinovirus 16 assemblies.
TURKEY ASTROVIRUS | ||
Contig Length | Sequence reads | Best Hit |
689 | 2 | Avian |
501 | 2 | None |
423 | 2 | None |
518 | 2 | None |
259 | 2 | None |
1267 | 28 | Turkey astrovirus |
2785 | 67 | Turkey astrovirus |
1692 | 43 | Turkey astrovirus |
Total Sequences | 148 | |
Percent Specific | 93.24% | |
Genome coverage | 90.84% | |
HUMAN RHINOVIRUS 16 | ||
Contig Length | Sequence Reads | Best Hit |
265 | 8 | Mammalian |
537 | 2 | Mammalian |
981 | 27 | Mammalian |
1091 | 7 | Bacterial |
1297 | 10 | Bacterial |
553 | 1 | None |
385 | 1 | None |
342 | 3 | None |
815 | 32 | None |
909 | 18 | None |
676 | 8 | None |
487 | 9 | None |
4823 | 105 | Human Rhinovirus 16 |
1685 | 90 | Human Rhinovirus 16 |
Total Sequences | 321 | |
Percent Specific | 60.75% | |
Genome coverage | 90.23% |
Sequences were analyzed against a non redundant database using a blastn algorithm. Viral specific sequences were identified as matching the reference genome with a blastn cut off below 10-25. Non-specific (non-viral contaminant) sequences were identified if they had a cut off value below 10-10, while None means that no blastn results were found below the 10-10 cut off value.