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. 2007 Nov 19;8(11):R245. doi: 10.1186/gb-2007-8-11-r245

Table 3.

Neutrality test and genetic diversity for main haplogroups in East Asian domestic pigs and wild boars

Haplogroup Domestic or wild No. Haplotype diversity Nucleotide diversity Fs test Tajima's D
D1a1a Domestic 291 0.781 ± 0.021 0.00267 ± 0.00016 -18.888* -1.732*
D1a2 Domestic 98 0.827 ± 0.040 0.00267 ± 0.00021 -27.869* -1.158
D1a Domestic 393 0.900 ± 0.008 0.00488 ± 0.00018 -43.161* -1.824*
D1b Domestic 88 0.601 ± 0.054 0.00177 ± 0.00013 -5.104* -1.138
D1c Domestic 49 0.842 ± 0.022 0.00445 ± 0.00029 -1.538 0.658
D1 Domestic 607 0.943 ± 0.004 0.00556 ± 0.00014 -25.487* -1.882*
D1 Wild boar 65 0.845 ± 0.051 0.00357 ± 0.00042 -10.64* -1.07984
D3 Domestic 42a 0.573 ± 0.081 0.00233 ± 0.00053 -2.779* -1.861*
D4 Domestic 18 0.743 ± 0.052 0.00534 ± 0.00054 0.173 0.802
D Domestic 689 0.954 ± 0.003 0.00691 ± 0.00014 -25.337* -1.830*
D Wild boar 136 0.946 ± 0.036 0.00600 ± 0.00039 -25.582* -0.30877

All of the values were calculated based on mitochondrial DNA (mtDNA) control region sequences. P < 0.05 in the neutrality test was regarded as statistically significant (indicated by asterisks [*]). Haplogroup D1a1 contained only one mtDNA besides samples belonging to D1a1a and was not listed. Haplogroups containing five or fewer samples were not analyzed. aIncluding feral pigs.