Skip to main content
. 2007 Nov 13;8(11):R240. doi: 10.1186/gb-2007-8-11-r240

Table 3.

Gene ontologies of up-regulated processes in BCs versus epithelial cells

Gene category List hits EASE score
Response to external stimulus (lymphocytic) 146 5.14E-09
Cellular process 490 4.74E-06
Response to biotic stimulus (lymphocytic) 94 4.87E-06
Ion transport 68 7.05E-06
Defense response (lymphocytic) 87 1.09E-05
Development (developmental) 165 5.05E-05
Hemostasis 19 1.15E-04
Blood coagulation (coagulation) 18 1.68E-04
Cell-cell signaling 60 2.23E-04
Response to abiotic stimulus (lymphocytic) 60 3.74E-04
Cyclic-nucleotide-mediated signaling 19 3.92E-04
Morphogenesis (developmental) 101 4.23E-04
Response to light 26 5.54E-04
Natural killer cell activation (lymphocytic) 6 7.08E-04
Second-messenger-mediated signaling 20 8.47E-04
Perception of light 25 9.29E-04
Synaptic transmission (neurophysiology) 31 9.63E-04
Cell communication 244 1.07E-03
Cation transport 46 1.46E-03
Transmission of nerve impulse (neurophysiology) 31 1.61E-03
Transport 159 1.65E-03
Response to radiation 26 1.73E-03
Organogenesis (developmental) 88 2.09E-03
Metal ion transport 36 2.15E-03
Perception of abiotic stimulus (lymphocytic) 35 2.34E-03
Vision 23 2.54E-03
Immune response (lymphocytic) 68 3.77E-03
Perception of external stimulus (lymphocytic) 37 4.60E-03
Cell surface receptor linked signal transduction 93 5.44E-03
Xenobiotic metabolism 10 6.19E-03
Sensory perception 34 6.34E-03
Heme biosynthesis (erythrocytic) 5 6.40E-03
Response to xenobiotic stimulus 10 8.00E-03
Skeletal development (development) 18 8.65E-03
Potassium ion transport 19 8.71E-03
G-protein signaling 15 9.32E-03
Pigment biosynthesis (erythrocytic) 6 1.10E-02
Monovalent inorganic cation transport 29 1.15E-02
Heme metabolism (erythrocytic) 5 1.16E-02
Negative regulation of natural killer cell activity (lymphocytic) 3 1.28E-02
Regulation of natural killer cell activity (lymphocytic) 3 1.28E-02
Anion transport 15 1.49E-02
Heart development (heart development) 6 1.63E-02
Histogenesis (developmental) 16 1.85E-02
Porphyrin biosynthesis (erythrocytic) 5 1.90E-02
Pigment metabolism (erythrocytic) 6 1.95E-02
Pigmentation (erythrocytic) 6 2.30E-02
Mesoderm development (mesoderm development) 7 2.37E-02
Cellular defense response (lymphocytic) 13 2.44E-02
Response to pest/pathogen/parasite (lymphocytic) 43 2.63E-02

When genes were clustered based on their GO, we identified processes characteristic of lymphocytic cells (response to stimulus, defense response, immune response), erythrocytes (heme and porphyrin biosynthesis), coagulation, neurophysiology, development, and mesoderm and heart development.