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. 2008 Mar 12;3(3):e1765. doi: 10.1371/journal.pone.0001765

Table 1. Conditions for RT-PCR quantification of specific mRNAs and 28S-rRNA.

RNA Forward primer (5′→3′) Reverse primer (5′→3′) Tannealing (°C) No. of cycles MgCl2 (mM)
Murine
Adipoq mRNA GGTGAGACAGGAGATGTTGG CCTGATACTGGTCGTAGG TG 64 45 3
Lep mRNA ACATTTCACACACGCAGTCG AGC ATT CAG GGC TAA CAT CC 69 55 5
Il6 mRNA GATGCTACCAAACTGGATATAATC GGTCCTTAGCCACTCCTTCTGTG 65 45 6
Tnf mRNA AAATGGCCTCCCTCTCATCA AGATAGCAAATCGGCTGACG 63 45 3
Rbp4 mRNA GTTTTCTCGTGACCCCAATG GGAGGTGGGGGAAACTAAAC 68 50 3
28S-rRNA CCAGTACTTCACTCCTGTCT TCTAAGAGTGAGCAACGACG 61 45 3
Human
ADIPOQ mRNA GTGATGGCAGAGATGGCAC AGAGGCTGACCTTCACATCC 65 45 4
IL6 mRNA CCAGCTATGAACTCCTTCTC GCTTGTTCCTCACATCTCTC 63 45 3
TNF mRNA GCGTGGAGCTGAGAGATAAC GATGTTCGTCCTCCTCACAG 61 45 4
IL1B mRNA* CATGGACAAGCTGAGGAAGA TTCAACACGCAGGACAGGTA 61 45 4
PBEF1 mRNA TCCAGGAAGCCAAAGATGTC GGCCACTGTGATTGGATACC 61 40 3
RETN mRNA GCCGGATTTGGTTAGCTGAG CTCATTGATGGCTTCTTCCA 66 40 6
CCL2 mRNA GCCTCCAGCATGAAAGTCTC TGGAATCCTGAACCCACTTC 61 40 3
28S-rRNA ACG GCG GGA GTA ACT ATG ACT CTT GGC TGT GGT TTC GCT 63 50 4
*

For detection of IL1B mRNA, the fluorescent dye-linked probes 5′-AGGTGCTCAGGTCATTCTCCTGG-FL-3′ and 5′-Red640-AGGTCTGTGGGCAGGGAACC-PH-3′ were used instead of SYBR Green.