Table 1. Conditions for RT-PCR quantification of specific mRNAs and 28S-rRNA.
RNA | Forward primer (5′→3′) | Reverse primer (5′→3′) | Tannealing (°C) | No. of cycles | MgCl2 (mM) |
Murine | |||||
Adipoq mRNA | GGTGAGACAGGAGATGTTGG | CCTGATACTGGTCGTAGG TG | 64 | 45 | 3 |
Lep mRNA | ACATTTCACACACGCAGTCG | AGC ATT CAG GGC TAA CAT CC | 69 | 55 | 5 |
Il6 mRNA | GATGCTACCAAACTGGATATAATC | GGTCCTTAGCCACTCCTTCTGTG | 65 | 45 | 6 |
Tnf mRNA | AAATGGCCTCCCTCTCATCA | AGATAGCAAATCGGCTGACG | 63 | 45 | 3 |
Rbp4 mRNA | GTTTTCTCGTGACCCCAATG | GGAGGTGGGGGAAACTAAAC | 68 | 50 | 3 |
28S-rRNA | CCAGTACTTCACTCCTGTCT | TCTAAGAGTGAGCAACGACG | 61 | 45 | 3 |
Human | |||||
ADIPOQ mRNA | GTGATGGCAGAGATGGCAC | AGAGGCTGACCTTCACATCC | 65 | 45 | 4 |
IL6 mRNA | CCAGCTATGAACTCCTTCTC | GCTTGTTCCTCACATCTCTC | 63 | 45 | 3 |
TNF mRNA | GCGTGGAGCTGAGAGATAAC | GATGTTCGTCCTCCTCACAG | 61 | 45 | 4 |
IL1B mRNA* | CATGGACAAGCTGAGGAAGA | TTCAACACGCAGGACAGGTA | 61 | 45 | 4 |
PBEF1 mRNA | TCCAGGAAGCCAAAGATGTC | GGCCACTGTGATTGGATACC | 61 | 40 | 3 |
RETN mRNA | GCCGGATTTGGTTAGCTGAG | CTCATTGATGGCTTCTTCCA | 66 | 40 | 6 |
CCL2 mRNA | GCCTCCAGCATGAAAGTCTC | TGGAATCCTGAACCCACTTC | 61 | 40 | 3 |
28S-rRNA | ACG GCG GGA GTA ACT ATG ACT | CTT GGC TGT GGT TTC GCT | 63 | 50 | 4 |
For detection of IL1B mRNA, the fluorescent dye-linked probes 5′-AGGTGCTCAGGTCATTCTCCTGG-FL-3′ and 5′-Red640-AGGTCTGTGGGCAGGGAACC-PH-3′ were used instead of SYBR Green.