Table 2.
Bioinformatic analysis overview for the genes characterized in this study. Shown are the overlapping ESTs used to determine the transcript (if any), whether the ESTs yielded a full-length transcript, whether the transcript could be verified by RT-PCR from the ATC-10 cell line, and whether gene prediction programs were employed for each gene.
| Gene | ESTs used | ESTs full- length? | Amplify from ATC- 10 cell line? | Gene prediction used? |
|---|---|---|---|---|
| IAP1 | NAa | NA | Yes | No |
| IAP2 | dv383781 | No | Yes | Yes/GenScan |
| eb090402 | ||||
| IAP5 | dv364268 | No | Yes | Yes/GenScan |
| DNR1 | dv237984 | No | Yes | No |
| eg007533 | ||||
| eb089278 | ||||
| dw221134 | ||||
| dw205154 | ||||
| ARK | NA | NA | Yes | No |
| BG4 | dv416615 | Yes | Yes | No |
| dv416614 | ||||
| dv383790 | ||||
| IMP | dv326893 | Yes | NDb | No |
| CASPS19 | dv395012 | Yes | No | No |
| dv330266 | ||||
| CASPS18 | NA | NA | ND | No |
| CASPS8 | dv250139 | Yes | Yes | No |
| dv250137 | ||||
| CASPS7 | dv369010 | No | Yes | Yes/GenScan |
| CASPS20 | dw202685 | Yes | ND | No |
| ee999223 | ||||
| Dredd | dv382387 | Yes | Yes | No |
| dv382385 | ||||
| dw190212 | ||||
| Dronc | dw220447 | Yes | Yes | No |
| dw207394 | ||||
| dv343751 | ||||
| dv356662 | ||||
| CASPS17 | dv323242 | No | No | Yes/fgenesh |
| CASPS21 | NA | NA | ND | Yes/fgenesh |
| CASPS16 | dv241054 | Yes | No | No |
| dv332892 | ||||
| dv328064 | ||||
| CASPS15 | NA | NA | ND | Yes/fgenesh |
a
NA, not applicable
b
ND, not determined