TABLE 1.
Taxon | Abbreviation used in figures | Strain and/or sourcea | Trophic modee | Accession no.i
|
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SSU rDNA | cob cDNA | cob gDNA | cox1 cDNA | cox1 gDNA | ||||
Adenoides eludens | CCMP1891 | P | AF274249 | EF036541 | EF036565 | |||
Akashiwo sanguinea | Asa | LIS1b | P | AY456106 | EF036542 | AY456105 | EF036566 | EU126138g |
Alexandrium affine | CCMP112 | P | AY831409 | EF036543 | EF377324 | |||
Alexandrium tamarense | Ata | CB307; D. M. Anderson | P | AF022191f | DQ082987 | AY456116 | EF036567 | EU126139g |
Amphidinium carterae | Aca | CCMP1314 | P | AF274251 | EF036544 | EU126130 | EF036568 | EU126140 |
Amphidinium operculatum | Aop | CCMP123 | P | AY443011f | EF036545 | EU126131 | EF036569 | EU126141 |
Ceratium longipes | CCMP1770 | P | DQ388462 | EF036546 | EF036570 | |||
Ceratocorys horrida | CCMP157 | P | DQ388456 | EF036547 | EF036571 | |||
Coolia monotis | CCMP304 | P | AJ415509f | EF036572 | ||||
Crypthecodinium cohnii | Cco | WHd; M. Gray | H | M64245 | AF403221 | AF403220 | AF487783 | AF186994 |
Dinophysis acuminata | Dac | Narragansett Bay sample | P | EU130569g | EU130567g | EU130568g | EU130565g | EU130566g |
Gambierdiscus toxicus | CCMP401 | P | DQ388463 | EF036550 | EF036575 | |||
Gonyaulax cochlea | CCMP1592 | P | DQ388465 | EF036551 | EF036576 | |||
Gymnodinium catenatum | CCMP1937 | P | AF022193f | EF036552 | ||||
Gymnodinium simplex | CCMP419 | P | DQ388466 | EF036553 | EF036577 | |||
Heterocapsa triquetra | Htr | CCPM449 | P | AJ415514f | EF036554 | EU126132 | EF036578 | EU126142 |
Heterocapsa rotundata (= Katodinium rotundatum) | Hro | CCMP1542 | P | DQ388464 | EF036556 | EU126133 | EF036582 | EU126143 |
Karenia brevis | Kbr | CCPM2229 | P | AF274259f | EF036555 | AY456104h | EF036580 | EU126144g |
Karenia mikimotoi | CCPM429 | P | AF009131f | EF036581 | ||||
Karlodinium veneficum (formerly K. micrum) | Kve | CCMP1975 | M | EF036540 | DQ082989 | AY345908 | EF036579 | AF463416g |
Noctiluca scintillans | Nsc | NS3; E. J. Buskey | H | DQ388461 | EF036583 | EU126145 | ||
Oxyrrhis marina | Oma | CCMP1795 | H | AF482425f | EF036557 | EU126134 | EF036584 | EU126146 |
Peridinium aciculiferum | PAER1 | P | AY970653 | DQ094825 | ||||
Pfiesteria piscicida | Ppi | CCMP1831 | H | AF330620 | AF357518 | AF357519 | AF463413 | AF463412 |
Pfiesteria-like | Ppi-like | CCMP1828 | H | AY590476 | EF036558 | AY456119 | EF036585 | EU126147g |
Prorocentrum cassubicum (= Exuviaella cassubica) | Pca | LB1596c | P | DQ388460 | EF036548 | EU126135g | EF036573 | |
Prorocentrum dentatum | Pde | CCMP1517 | P | DQ336057 | DQ336059 | DQ336058 | ||
Prorocentrum donghaiense | Pdo | S. Lü | P | DQ336054 | DQ336056 | DQ336055 | EF036587 | |
Prorocentrum lima (= Exuviaella lima) | CCMP1966 | P | EF377326 | EF036559 | EF377325 | |||
Prorocentrum micans | Pmic | CCMP1589 | P | AY585526 | AY745238 | AY585525 | EF036588 | EU126148g |
Prorocentrum minimum strain 696 | Pmin | CCMP696 | P | DQ336072 | AY030285 | AY030286 | AF463415 | AF463414 |
Prorocentrum minimum strain EXUV | PmEXUV | CCMP1329 | P | DQ336060 | DQ336062 | DQ336061 | ||
Prorocentrum minimum strain JA01 | Pm01 | JA01; P. Glibert | P | DQ336063 | DQ336065 | DQ336064 | ||
Prorocentrum minimum strain PTPM | PmPTPM | PTPM; P. Tester | P | DQ336069 | DQ336071 | DQ336070 | ||
Prorocentrum nanum (= Exuviaella pusilla) | Pna | LB1008c | P | DQ388459 | EF036549 | EU126136 | EF036574 | |
Protoceratium reticulatum | Pre | CCMP1721 | P | AF274273f | EF036560 | EU126137g | EF036589 | EU126149g |
Pseudopfiesteria shumwayae | Psh | T4; P. Tester, | H | AF218805f | DQ082988 | AF502593 | EF036586 | EU130570g |
Pyrocystis lunula | J. W. Hastings | P | AF274274f | EF036561 | EF036590 | |||
Pyrocystis noctiluca | CCMP732 | P | AF022156 | EF036562 | EF036591 | |||
Scrippsiella sp. | Scrsp | LISb | P | AY743960 | AY743962 | AY743961 | EF036592 | EU130571g |
Scrippsiella sweeneyae | CCCM280d | P | AF274276 | EF036563 | EF036593 | |||
Symbiodinium goreaui | Sgo | CCMP2466 | P | EF036539 | EF036564 | EU130574g | ||
Symbiodinium microadriaticum | Smi | CCMP830 | P | AY456111 | DQ082985 | AY456110 | EF036594 | EU130573g |
Symbiodinium sp. | Symsp | CCMP832 | P | AY456113 | DQ082986 | AY456112 | EF036595 | EU130572g |
CCMP strains are from the Provasoli-Guillard National Center for Culture of Marine Phytoplankton, West Boothbay Harbor, ME.
Isolated from Long Island Sound in April 2003, morphologically similar to Akashiwo sanguinea based on the description in reference 37 and SSU rDNA sequence (identical to AF276818). The LIS isolate of Scrippsiella sp. is most closely related to S. trochoidea based on morphology (37) and SSU rDNA identity (1,738 bp out of 1,754 bp identical to AY421792).
The Culture Collection of Algae (UTEX), The University of Texas at Austin, TX.
Canadian Center for the Culture of Microorganisms, University Boulevard, Vancouver, BC, Canada.
P, photoautotrophic; H, heterotrophic; M, mixotrophic.
Sequence from GenBank originally obtained from other strains of the same species as used in this study.
Sequences and editing analyzed in the present study.
Editing analyzed in the present study.