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. 2007 Dec 28;74(5):1546–1554. doi: 10.1128/AEM.02103-07

TABLE 1.

Dinoflagellate species included in the phylogeny and mitochondrial cob and cox1 editing analyses

Taxon Abbreviation used in figures Strain and/or sourcea Trophic modee Accession no.i
SSU rDNA cob cDNA cob gDNA cox1 cDNA cox1 gDNA
Adenoides eludens CCMP1891 P AF274249 EF036541 EF036565
Akashiwo sanguinea Asa LIS1b P AY456106 EF036542 AY456105 EF036566 EU126138g
Alexandrium affine CCMP112 P AY831409 EF036543 EF377324
Alexandrium tamarense Ata CB307; D. M. Anderson P AF022191f DQ082987 AY456116 EF036567 EU126139g
Amphidinium carterae Aca CCMP1314 P AF274251 EF036544 EU126130 EF036568 EU126140
Amphidinium operculatum Aop CCMP123 P AY443011f EF036545 EU126131 EF036569 EU126141
Ceratium longipes CCMP1770 P DQ388462 EF036546 EF036570
Ceratocorys horrida CCMP157 P DQ388456 EF036547 EF036571
Coolia monotis CCMP304 P AJ415509f EF036572
Crypthecodinium cohnii Cco WHd; M. Gray H M64245 AF403221 AF403220 AF487783 AF186994
Dinophysis acuminata Dac Narragansett Bay sample P EU130569g EU130567g EU130568g EU130565g EU130566g
Gambierdiscus toxicus CCMP401 P DQ388463 EF036550 EF036575
Gonyaulax cochlea CCMP1592 P DQ388465 EF036551 EF036576
Gymnodinium catenatum CCMP1937 P AF022193f EF036552
Gymnodinium simplex CCMP419 P DQ388466 EF036553 EF036577
Heterocapsa triquetra Htr CCPM449 P AJ415514f EF036554 EU126132 EF036578 EU126142
Heterocapsa rotundata (= Katodinium rotundatum) Hro CCMP1542 P DQ388464 EF036556 EU126133 EF036582 EU126143
Karenia brevis Kbr CCPM2229 P AF274259f EF036555 AY456104h EF036580 EU126144g
Karenia mikimotoi CCPM429 P AF009131f EF036581
Karlodinium veneficum (formerly K. micrum) Kve CCMP1975 M EF036540 DQ082989 AY345908 EF036579 AF463416g
Noctiluca scintillans Nsc NS3; E. J. Buskey H DQ388461 EF036583 EU126145
Oxyrrhis marina Oma CCMP1795 H AF482425f EF036557 EU126134 EF036584 EU126146
Peridinium aciculiferum PAER1 P AY970653 DQ094825
Pfiesteria piscicida Ppi CCMP1831 H AF330620 AF357518 AF357519 AF463413 AF463412
Pfiesteria-like Ppi-like CCMP1828 H AY590476 EF036558 AY456119 EF036585 EU126147g
Prorocentrum cassubicum (= Exuviaella cassubica) Pca LB1596c P DQ388460 EF036548 EU126135g EF036573
Prorocentrum dentatum Pde CCMP1517 P DQ336057 DQ336059 DQ336058
Prorocentrum donghaiense Pdo S. Lü P DQ336054 DQ336056 DQ336055 EF036587
Prorocentrum lima (= Exuviaella lima) CCMP1966 P EF377326 EF036559 EF377325
Prorocentrum micans Pmic CCMP1589 P AY585526 AY745238 AY585525 EF036588 EU126148g
Prorocentrum minimum strain 696 Pmin CCMP696 P DQ336072 AY030285 AY030286 AF463415 AF463414
Prorocentrum minimum strain EXUV PmEXUV CCMP1329 P DQ336060 DQ336062 DQ336061
Prorocentrum minimum strain JA01 Pm01 JA01; P. Glibert P DQ336063 DQ336065 DQ336064
Prorocentrum minimum strain PTPM PmPTPM PTPM; P. Tester P DQ336069 DQ336071 DQ336070
Prorocentrum nanum (= Exuviaella pusilla) Pna LB1008c P DQ388459 EF036549 EU126136 EF036574
Protoceratium reticulatum Pre CCMP1721 P AF274273f EF036560 EU126137g EF036589 EU126149g
Pseudopfiesteria shumwayae Psh T4; P. Tester, H AF218805f DQ082988 AF502593 EF036586 EU130570g
Pyrocystis lunula J. W. Hastings P AF274274f EF036561 EF036590
Pyrocystis noctiluca CCMP732 P AF022156 EF036562 EF036591
Scrippsiella sp. Scrsp LISb P AY743960 AY743962 AY743961 EF036592 EU130571g
Scrippsiella sweeneyae CCCM280d P AF274276 EF036563 EF036593
Symbiodinium goreaui Sgo CCMP2466 P EF036539 EF036564 EU130574g
Symbiodinium microadriaticum Smi CCMP830 P AY456111 DQ082985 AY456110 EF036594 EU130573g
Symbiodinium sp. Symsp CCMP832 P AY456113 DQ082986 AY456112 EF036595 EU130572g
a

CCMP strains are from the Provasoli-Guillard National Center for Culture of Marine Phytoplankton, West Boothbay Harbor, ME.

b

Isolated from Long Island Sound in April 2003, morphologically similar to Akashiwo sanguinea based on the description in reference 37 and SSU rDNA sequence (identical to AF276818). The LIS isolate of Scrippsiella sp. is most closely related to S. trochoidea based on morphology (37) and SSU rDNA identity (1,738 bp out of 1,754 bp identical to AY421792).

c

The Culture Collection of Algae (UTEX), The University of Texas at Austin, TX.

d

Canadian Center for the Culture of Microorganisms, University Boulevard, Vancouver, BC, Canada.

e

P, photoautotrophic; H, heterotrophic; M, mixotrophic.

f

Sequence from GenBank originally obtained from other strains of the same species as used in this study.

g

Sequences and editing analyzed in the present study.

h

Editing analyzed in the present study.

i

Unless indicated otherwise, the taxon was reported previously (21, 43). gDNA, genomic DNA.