TABLE 2.
Primers used in this study
| Primer name | Position in Fig. 1 | Amplicon (length in bp) | Sequence (5′-3′) |
|---|---|---|---|
| SH0383-f | 1 | SH0383 (889) | TTTTAAGCGCAGGAACAAGG |
| SH0383-r | 2 | SH0383 (889) | CCAATTTCACTTTTATTAGTTTTGC |
| SH0384-f | 3 | SH0384 (391) | TTCCCAGTTAGTAAGACTGAAATAGC |
| SH0384-r | 4 | SH0384 (391) | TCTTCTCCATTATATTAACGTCTATCC |
| SH0385-f | 5 | SH0385 (586) | TTATTACCATTAAACCTTTCG |
| SH0385-r | 6 | SH0385 (586) | TGAAAAGAATATTTGATATTGG |
| acpD-f | 7 | acpD (551) | ATTTCTTCAGTTTTCTCAGG |
| acpD-r | 8 | acpD (551) | CATCCTTTAGATGAATTAGG |
| capA-f | 9 | TTCCTGTAAATATTGCGGTAGC | |
| capC-r | 10 | capABCSh (1,477) | GTCTTTGAGATTCATGATGAGC |
| capD-r | 11 | capABCDSh (3,184) | CGAATACTTCTCCACCTTTAGC |
| capE-f | 12 | ACCTTCTTGCGAATTCTTCC | |
| capF-r | 13 | capEFSh (1,603) | CCGAAACTTGACCTCTGTC |
| capG-r | 14 | capEFGSh (2,927) | TCGATAGCGTCAATCATAGG |
| capH-f | 15 | GTATTGATCATGCGGAATCG | |
| capI-r | 16 | capHISh (1,497) | AAATGGAAACAAGAAGAAAGC |
| capJ-r | 17 | capHIJSh (3,201) | AAGCCCAAACTTTCTACTTGG |
| capK-f | 18 | CAGAGCTAATGGCTTATTTGACC | |
| capL-r | 19 | capKLSh (1,539) | CACTTCCATTTGTCCTCTTCC |
| capM-r | 20 | capKLMSh (2,800) | AGATTGTCATCACCCAGTGC |
| phoB-f | 21 | phoB (1,319) | TGACCATAAGTAGTCCAACC |
| phoB-r | 22 | phoB (1,319) | TTTGGTAAAACAACAGTAGC |
| recA-f | Not shown | recA (935) | TCAACATCTCCATCGAAAATACC |
| recA-r | Not shown | recA (935) | GGTGCCGTTATGAAACTAGGC |
| icaR-f | Not shown | icaR-icaA (770) | GAAAATAAGGTTATTGCGTTATCA |
| icaA-r | Not shown | icaR-icaA (770) | TTAATACAGCCAATTAAACTTGCATATTC |