TABLE 2.
Nucleotide and amino acid sequence identities of the 3′ 7.5 kb of the genomes of 17 Australian IBV strains and strain Beaudettea
| Strain | % Identity with:
|
|||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Armidale | V2/02 | N1/62 | V3/02 | S | Vic S | Q1/76 | V5/90 | Q1/99 | Q1/73 | N2/75 | V1/71 | V2/71 | Beaudette | V18/91 | V6/92 | N1/88 | Q3/88 | |
| Armidale | 100.0 | 98.3 | 97.0 | 97.0 | 92.6 | 92.7 | 92.7 | 92.9 | 92.5 | 92.8 | 92.0 | 91.6 | 92.1 | 90.2 | 72.5 | 72.6 | 70.7 | 71.6 |
| V2/02 | 94.1 | 100.0 | 97.0 | 97.5 | 93.5 | 93.6 | 93.7 | 93.7 | 93.4 | 93.4 | 92.0 | 92.0 | 92.0 | 90.4 | 72.8 | 73.0 | 71.0 | 71.8 |
| N1/62 | 93.3 | 93.1 | 100.0 | 96.1 | 93.0 | 93.1 | 93.1 | 93.2 | 93.0 | 92.9 | 92.3 | 91.6 | 91.8 | 90.3 | 72.6 | 72.6 | 70.9 | 71.7 |
| V3/02 | 92.6 | 93.5 | 91.6 | 100.0 | 94.8 | 94.9 | 94.8 | 95.0 | 94.6 | 94.0 | 92.6 | 92.4 | 92.5 | 90.1 | 72.6 | 72.8 | 70.9 | 71.7 |
| S | 86.9 | 88.5 | 87.1 | 90.0 | 100.0 | 99.1 | 99.0 | 99.2 | 99.2 | 94.8 | 93.9 | 92.8 | 92.5 | 90.2 | 72.4 | 72.6 | 70.5 | 71.1 |
| Vic S | 86.9 | 88.5 | 87.1 | 89.9 | 94.9 | 100.0 | 99.2 | 99.4 | 98.9 | 95.0 | 94.0 | 92.9 | 92.7 | 90.1 | 72.6 | 72.8 | 70.6 | 71.4 |
| Q1/76 | 86.6 | 88.2 | 86.8 | 89.6 | 94.6 | 94.6 | 100.0 | 99.4 | 98.8 | 94.9 | 94.1 | 92.8 | 92.7 | 90.1 | 72.5 | 72.7 | 70.6 | 71.3 |
| V5/90 | 86.9 | 88.4 | 87.1 | 89.9 | 94.9 | 94.9 | 94.6 | 100.0 | 99.0 | 95.1 | 94.2 | 93.0 | 92.8 | 90.2 | 72.5 | 72.7 | 70.6 | 71.4 |
| Q1/99 | 86.7 | 88.2 | 86.9 | 89.7 | 94.8 | 94.6 | 94.3 | 94.6 | 100.0 | 94.6 | 93.9 | 92.8 | 92.5 | 90.1 | 72.4 | 72.5 | 70.4 | 71.2 |
| Q1/73 | 87.9 | 89.1 | 88.0 | 89.2 | 90.6 | 90.6 | 90.2 | 90.5 | 90.3 | 100.0 | 92.9 | 91.7 | 91.5 | 90.2 | 72.5 | 72.7 | 70.5 | 71.4 |
| N2/75 | 87.2 | 87.2 | 87.4 | 87.9 | 89.0 | 88.9 | 88.6 | 88.9 | 88.7 | 89.3 | 100.0 | 91.1 | 91.8 | 88.8 | 72.1 | 72.4 | 70.5 | 71.8 |
| V1/71 | 86.5 | 86.9 | 87.0 | 87.5 | 88.0 | 87.9 | 87.6 | 87.9 | 87.8 | 87.5 | 86.9 | 100.0 | 94.4 | 88.5 | 71.6 | 71.7 | 69.9 | 70.5 |
| V2/71 | 87.7 | 87.7 | 87.7 | 88.2 | 87.9 | 87.9 | 87.6 | 87.9 | 87.7 | 87.7 | 87.5 | 89.3 | 100.0 | 88.5 | 71.4 | 71.5 | 69.8 | 70.6 |
| Beaudette | 82.7 | 82.6 | 82.8 | 82.9 | 82.5 | 82.5 | 82.2 | 82.6 | 82.4 | 82.8 | 82.4 | 82.3 | 82.8 | 100.0 | 72.2 | 72.2 | 70.3 | 70.3 |
| V18/91 | 59.4 | 59.6 | 59.6 | 59.6 | 59.5 | 59.5 | 59.4 | 59.5 | 59.4 | 59.1 | 59.2 | 59.5 | 59.9 | 58.6 | 100.0 | 99.5 | 94.6 | 89.0 |
| V6/92 | 59.2 | 59.4 | 59.4 | 59.4 | 59.3 | 59.3 | 59.2 | 59.3 | 59.2 | 58.9 | 58.9 | 59.3 | 59.7 | 58.4 | 88.3 | 100.0 | 95.0 | 89.4 |
| N1/88 | 59.8 | 59.9 | 59.9 | 60.0 | 59.7 | 59.7 | 59.6 | 59.7 | 59.6 | 59.3 | 59.4 | 59.5 | 60.1 | 58.8 | 82.9 | 82.6 | 100.0 | 90.0 |
| Q3/88 | 59.9 | 60.0 | 60.1 | 60.0 | 59.6 | 59.6 | 59.5 | 59.6 | 59.5 | 59.4 | 59.7 | 59.5 | 60.1 | 58.9 | 77.5 | 77.2 | 79.5 | 100.0 |
a
Boldface type indicates nucleotide identity, whereas lightface type indicates amino acid identity.