TABLE 2.
Gene identifiera
|
Gene name | Annotation | Ratiob | |
---|---|---|---|---|
D39 | TIGR4/R6 | |||
SPD_0051 | SP_0044 | purC | Phosphoribosylaminoimidazole-succinocarboxamide synthase | 1.1 |
SPD_0111 | spr0103 | Argininosuccinate lyase | 1.1 | |
SPD_0142 | SP_0139 | Hypothetical protein | 1.3 | |
SPD_0143 | spr0139 | UDP-glucose 6-dehydrogenase | 1.9 | |
SPD_0144 | SP_0141 | mutR | Transcriptional regulator | 2.0 |
SPD_0145 | SP_0142 | Hypothetical protein | 3.8 | |
SPD_0146 | SP_0143 | CAAX amino-terminal protease family protein | 3.9 | |
SPD_0147 | SP_0144 | CAAX amino-terminal protease family protein | 4.0 | |
SPD_0148 | SP_0145 | ABC transporter, substrate-binding protein | 3.9 | |
SPD_0149 | SP_0146 | Hypothetical protein | 1.7 | |
SPD_0161 | SP_0159 | Hypothetical protein | 3.9 | |
SPD_0283 | SP_0310 | PTS system, IIC component | 1.5 | |
SPD_0300 | SP_0327 | Hypothetical protein | 1.5 | |
SPD_0334 | SP_0366 | aliA | Oligopeptide ABC transporter | 2.1 |
SPD_0335 | SP_0368 | Cell wall surface anchor family protein | 1.4 | |
SPD_0361 | SP_0395 | Transcriptional regulator, putative | 1.4 | |
SPD_0364 | spr0361 | ABC-type polar amino acid transport system | 3.5 | |
SPD_0404 | SP_0445 | ilvB | Acetolactate synthase, large subunit | 3.2 |
SPD_0405 | SP_0446 | ilvN | Acetolactate synthase, small subunit | 3.4 |
SPD_0406 | SP_0447 | ilvC | Ketol acid reductoisomerase | 3.1 |
SPD_0407 | SP_0448 | Hypothetical protein | 2.5 | |
SPD_0408 | SP_0449 | Hypothetical protein | 2.7 | |
SPD_0409 | SP_0450 | ilvA | Threonine dehydratase | 2.7 |
SPD_0424 | SP_0474 | PTS system, cellobiose-specific IIC component | 1.1 | |
SPD_0541 | spr0470 | blpO | Bacteriocin | 2.4 |
SPD_0652 | SP_0749 | livJ | Branched-chain amino acid ABC transporter | 1.0 |
SPD_0653 | SP_0750 | livH | Branched-chain amino acid ABC transporter | 1.4 |
SPD_0654 | SP_0751 | livM | Branched-chain amino acid ABC transporter, permease protein | 1.7 |
SPD_0655 | SP_0752 | livG | Branched-chain amino acid ABC transporter | 1.7 |
SPD_0656 | SP_0753 | livF | Branched-chain amino acid ABC transporter | 1.7 |
SPD_0749 | SP_0856 | ilvE | Branched-chain amino acid aminotransferase | 1.8 |
SPD_0751 | SP_0858 | Hypothetical protein | 1.8 | |
SPD_0752 | SP_0859 | Hypothetical protein | 1.6 | |
SPD_0753 | SP_0860 | pcp | Pyrrolidone-carboxylate peptidase | 1.7 |
SPD_0778 | spr0786 | Hypothetical protein | 2.4 | |
SPD_0778 | SP_0882 | Hypothetical protein | 2.3 | |
SPD_0780 | SP_0884 | Hypothetical protein | 2.0 | |
SPD_0780 | spr0788 | Hypothetical protein | 1.9 | |
SPD_0781 | SP_0885 | Hypothetical protein | 2.3 | |
SPD_0844 | SP_0955 | celB | Competence protein | 1.1 |
SPD_0900 | SP_1013 | asd | Aspartate-semialdehyde dehydrogenase | 2.0 |
SPD_0901 | SP_1014 | dapA | Dihydrodipicolinate synthase | 2.1 |
SPD_1004 | SP_1119 | gapN | Glyceraldehyde-3-phosphate dehydrogenase, NADP dependent | 2.2 |
SPD_1011 | SP_1126 | glxK | Glycerate kinase | 1.1 |
SPD_1156 | spr1179 | Putative iron-dependent peroxidase | 1.0 | |
SPD_1158 | SP_1306 | gdhA | NADP-specific glutamate dehydrogenase | 2.1 |
SPD_1190 | SP_1356 | Atz/Trz family protein | 1.1 | |
SPD_1191 | SP_1357 | ABC transporter, ATP-binding/permease protein | 1.1 | |
SPD_1192 | SP_1358 | ABC transporter, ATP-binding/permease protein | 1.3 | |
SPD_1276 | spr1302 | Hypothetical protein | 1.3 | |
SPD_1464 | SP_1651 | psaD | Thiol peroxidase | 1.3 |
SPD_1472 | SP_1659 | ileS | Isoleucyl-tRNA synthetase | 1.1 |
SPD_1500 | SP_1688 | ABC transporter, permease protein | 1.1 | |
SPD_1563 | spr1598 | Dicarboxylate/amino acid:cation (Na+ or H+) symporter | 1.3 | |
SPD_1564 | SP_1754 | Hypothetical protein | 1.1 | |
SPD_1585 | spr1620 | ABC transporter, sugar-binding protein | 1.7 | |
SPD_1596 | SP_1811 | trpA | Tryptophan synthase, alpha subunit | 1.1 |
SPD_1602 | SP_1817 | trpE | Anthranilate synthase component I | 1.1 |
SPD_1649 | SP_1869 | fatD | Iron compound ABC transporter, permease protein | 1.5 |
SPD_1650 | SP_1870 | fatC | ABC transporter membrane-spanning permease, ferric iron transport | 1.5 |
SPD_1651 | SP_1871 | fecA | ABC transporter ATP-binding protein, ferric iron transport | 1.1 |
SPD_1652 | SP_1872 | fatB | Iron compound ABC transporter, iron compound-binding protein | 1.1 |
SPD_1667 | SP_1887 | amiF | ABC transporter, ATP-binding protein, oligopeptide transport | 1.1 |
SPD_1668 | SP_1888 | amiE | ABC transporter, ATP-binding protein, oligopeptide transport | 1.3 |
SPD_1669 | SP_1889 | amiD | ABC transporter, membrane-spanning permease, oligopeptide transport | 1.2 |
SPD_1670 | SP_1890 | amiC | ABC transporter membrane-spanning permease, oligopeptide transport | 1.1 |
SPD_1783 | SP_1986 | Hypothetical protein | 1.1 | |
SPD_1840 | SP_2031 | Predicted Zn-dependent hydrolases of the β-lactamase fold | 1.3 | |
SPD_1845 | SP_2036 | PTS system, ascorbate-specific IIA component, PTS-EII | 1.3 | |
SPD_1954 | SP_2125 | Hypothetical protein | 2.2 | |
SPD_1981 | spr1961 | Hypothetical protein | 1.1 | |
SPD_1985 | SP_2157 | adh2 | Alcohol dehydrogenase, iron containing | 1.0 |
SPD_1988 | SP_2160 | Hypothetical protein | 1.1 | |
SPD_1994 | SP_2166 | fucA | l-Fuculose-phosphate aldolase | 1.2 |
SPD_0096 | SP_0100 | Transcriptional regulator, PadR family protein | −1.0 | |
SPD_0381 | SP_0418 | acp | Acyl carrier protein | −1.0 |
SPD_0448 | SP_0502 | glnA | glnA, glutamine synthetase | −6.5 |
SPD_0803 | SP_0910 | Hypothetical protein | −1.1 | |
SPD_1098 | SP_1241 | glnP | Glutamine/glutamate transporter | −6.2 |
SPD_1099 | SP_1242 | glnQ | Glutamine/glutamate transporter | −3.2 |
SPD_1402 | SP_1572 | dpr | Starved-cell-like peroxide resistance protein | −1.1 |
SPD_1524 | SP_1714 | Transcriptional regulator, GntR family protein | −1.3 | |
SPD_1526 | spr1560 | Hypothetical protein (ABC-2 transporter) | −1.1 | |
SPD_1526 | SP_1715 | Hypothetical protein, ABC-2 type transporter | −1.2 | |
SPD_1607 | SP_1824 | ABC transporter, permease protein [Fe(III)] | −1.2 | |
SPD_2068 | SP_2239 | htrA | Serine protease | −1.1 |
Gene identifier as deposited in the NCBI Gene Expression Omnibus (GEO) database under GEO Series accession number GSE9850 (TIGR4, SP; R6, SPR). Genes directly regulated by GlnR are in boldface.
The microarray ratio is a log2-transformed expression of ΔglnPA expression with respect to that of the wild-type strain.