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. 2008 Jan 3;76(3):1230–1238. doi: 10.1128/IAI.01004-07

TABLE 2.

Differentially expressed genes in D39 ΔglnAP

Gene identifiera
Gene name Annotation Ratiob
D39 TIGR4/R6
SPD_0051 SP_0044 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase 1.1
SPD_0111 spr0103 Argininosuccinate lyase 1.1
SPD_0142 SP_0139 Hypothetical protein 1.3
SPD_0143 spr0139 UDP-glucose 6-dehydrogenase 1.9
SPD_0144 SP_0141 mutR Transcriptional regulator 2.0
SPD_0145 SP_0142 Hypothetical protein 3.8
SPD_0146 SP_0143 CAAX amino-terminal protease family protein 3.9
SPD_0147 SP_0144 CAAX amino-terminal protease family protein 4.0
SPD_0148 SP_0145 ABC transporter, substrate-binding protein 3.9
SPD_0149 SP_0146 Hypothetical protein 1.7
SPD_0161 SP_0159 Hypothetical protein 3.9
SPD_0283 SP_0310 PTS system, IIC component 1.5
SPD_0300 SP_0327 Hypothetical protein 1.5
SPD_0334 SP_0366 aliA Oligopeptide ABC transporter 2.1
SPD_0335 SP_0368 Cell wall surface anchor family protein 1.4
SPD_0361 SP_0395 Transcriptional regulator, putative 1.4
SPD_0364 spr0361 ABC-type polar amino acid transport system 3.5
SPD_0404 SP_0445 ilvB Acetolactate synthase, large subunit 3.2
SPD_0405 SP_0446 ilvN Acetolactate synthase, small subunit 3.4
SPD_0406 SP_0447 ilvC Ketol acid reductoisomerase 3.1
SPD_0407 SP_0448 Hypothetical protein 2.5
SPD_0408 SP_0449 Hypothetical protein 2.7
SPD_0409 SP_0450 ilvA Threonine dehydratase 2.7
SPD_0424 SP_0474 PTS system, cellobiose-specific IIC component 1.1
SPD_0541 spr0470 blpO Bacteriocin 2.4
SPD_0652 SP_0749 livJ Branched-chain amino acid ABC transporter 1.0
SPD_0653 SP_0750 livH Branched-chain amino acid ABC transporter 1.4
SPD_0654 SP_0751 livM Branched-chain amino acid ABC transporter, permease protein 1.7
SPD_0655 SP_0752 livG Branched-chain amino acid ABC transporter 1.7
SPD_0656 SP_0753 livF Branched-chain amino acid ABC transporter 1.7
SPD_0749 SP_0856 ilvE Branched-chain amino acid aminotransferase 1.8
SPD_0751 SP_0858 Hypothetical protein 1.8
SPD_0752 SP_0859 Hypothetical protein 1.6
SPD_0753 SP_0860 pcp Pyrrolidone-carboxylate peptidase 1.7
SPD_0778 spr0786 Hypothetical protein 2.4
SPD_0778 SP_0882 Hypothetical protein 2.3
SPD_0780 SP_0884 Hypothetical protein 2.0
SPD_0780 spr0788 Hypothetical protein 1.9
SPD_0781 SP_0885 Hypothetical protein 2.3
SPD_0844 SP_0955 celB Competence protein 1.1
SPD_0900 SP_1013 asd Aspartate-semialdehyde dehydrogenase 2.0
SPD_0901 SP_1014 dapA Dihydrodipicolinate synthase 2.1
SPD_1004 SP_1119 gapN Glyceraldehyde-3-phosphate dehydrogenase, NADP dependent 2.2
SPD_1011 SP_1126 glxK Glycerate kinase 1.1
SPD_1156 spr1179 Putative iron-dependent peroxidase 1.0
SPD_1158 SP_1306 gdhA NADP-specific glutamate dehydrogenase 2.1
SPD_1190 SP_1356 Atz/Trz family protein 1.1
SPD_1191 SP_1357 ABC transporter, ATP-binding/permease protein 1.1
SPD_1192 SP_1358 ABC transporter, ATP-binding/permease protein 1.3
SPD_1276 spr1302 Hypothetical protein 1.3
SPD_1464 SP_1651 psaD Thiol peroxidase 1.3
SPD_1472 SP_1659 ileS Isoleucyl-tRNA synthetase 1.1
SPD_1500 SP_1688 ABC transporter, permease protein 1.1
SPD_1563 spr1598 Dicarboxylate/amino acid:cation (Na+ or H+) symporter 1.3
SPD_1564 SP_1754 Hypothetical protein 1.1
SPD_1585 spr1620 ABC transporter, sugar-binding protein 1.7
SPD_1596 SP_1811 trpA Tryptophan synthase, alpha subunit 1.1
SPD_1602 SP_1817 trpE Anthranilate synthase component I 1.1
SPD_1649 SP_1869 fatD Iron compound ABC transporter, permease protein 1.5
SPD_1650 SP_1870 fatC ABC transporter membrane-spanning permease, ferric iron transport 1.5
SPD_1651 SP_1871 fecA ABC transporter ATP-binding protein, ferric iron transport 1.1
SPD_1652 SP_1872 fatB Iron compound ABC transporter, iron compound-binding protein 1.1
SPD_1667 SP_1887 amiF ABC transporter, ATP-binding protein, oligopeptide transport 1.1
SPD_1668 SP_1888 amiE ABC transporter, ATP-binding protein, oligopeptide transport 1.3
SPD_1669 SP_1889 amiD ABC transporter, membrane-spanning permease, oligopeptide transport 1.2
SPD_1670 SP_1890 amiC ABC transporter membrane-spanning permease, oligopeptide transport 1.1
SPD_1783 SP_1986 Hypothetical protein 1.1
SPD_1840 SP_2031 Predicted Zn-dependent hydrolases of the β-lactamase fold 1.3
SPD_1845 SP_2036 PTS system, ascorbate-specific IIA component, PTS-EII 1.3
SPD_1954 SP_2125 Hypothetical protein 2.2
SPD_1981 spr1961 Hypothetical protein 1.1
SPD_1985 SP_2157 adh2 Alcohol dehydrogenase, iron containing 1.0
SPD_1988 SP_2160 Hypothetical protein 1.1
SPD_1994 SP_2166 fucA l-Fuculose-phosphate aldolase 1.2
SPD_0096 SP_0100 Transcriptional regulator, PadR family protein −1.0
SPD_0381 SP_0418 acp Acyl carrier protein −1.0
SPD_0448 SP_0502 glnA glnA, glutamine synthetase −6.5
SPD_0803 SP_0910 Hypothetical protein −1.1
SPD_1098 SP_1241 glnP Glutamine/glutamate transporter −6.2
SPD_1099 SP_1242 glnQ Glutamine/glutamate transporter −3.2
SPD_1402 SP_1572 dpr Starved-cell-like peroxide resistance protein −1.1
SPD_1524 SP_1714 Transcriptional regulator, GntR family protein −1.3
SPD_1526 spr1560 Hypothetical protein (ABC-2 transporter) −1.1
SPD_1526 SP_1715 Hypothetical protein, ABC-2 type transporter −1.2
SPD_1607 SP_1824 ABC transporter, permease protein [Fe(III)] −1.2
SPD_2068 SP_2239 htrA Serine protease −1.1
a

Gene identifier as deposited in the NCBI Gene Expression Omnibus (GEO) database under GEO Series accession number GSE9850 (TIGR4, SP; R6, SPR). Genes directly regulated by GlnR are in boldface.

b

The microarray ratio is a log2-transformed expression of ΔglnPA expression with respect to that of the wild-type strain.