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. 2008 Jan 16;82(6):2784–2791. doi: 10.1128/JVI.01720-07

FIG. 3.

FIG. 3.

Phylogenetic relationships of subjects 00015 and 00016 HIV-1 sequences to clade B consensus, NL4-3, and other primary isolates. Multiple cloned sequences from subjects 00015 and 00016 were compared to other contemporaneous primary isolate sequences, NL4-3, and Los Alamos National Laboratory HIV Sequence Database clade B consensus sequences. Neighbor-joining trees rooted on the clade B consensus sequence and evaluated with 1,000 bootstrap replicates are shown for gag (nucleotides 1232 to 1754 according to the HXB2 numbering system) and nef. Similar phylogenetic clustering relationships were observed for subject 00015 and 00016 pol and vif (not shown).