Skip to main content
. 2008 Mar 19;3(3):e1805. doi: 10.1371/journal.pone.0001805

Table 3. Functional annotation proposed for 16 Esv-mutants published by smith and colleagues [64].

Gene labela Gene Name Esv-mutant Namea Annotation Putative Ortholog Essential in A. baylyi ADP1b Essential in E. coli c
A1S_3223 - EsvA putative transcriptional regulator No Homolog No Homolog
A1S_1232 - EsvB putative transcriptional regulator ABAYE2526 No Homolog No Homolog
A1S_1012 ureA EsvC urease gamma subunit ABAYE2778,ABSDF2377,ACIAD1089 No No
A1S_2447 pstC EsvD high-affinity phosphate transport protein ABAYE1033,ABSDF1101,ACIAD1213 No No
A1S_2313 queF EsvE1 7-cyano-7-deazaguanine reductase ABAYE1164,ABSDF1213,ACIAD2261 No No
A1S_2314 - EsvE2 conserved hypothetical protein ABAYE1163,ABSDF1212,ACIAD2262 No No
A1S_2315 rodA EsvE3 rod shape-determining protein ABAYE1162,ABSDF1211,ACIAD2263 No Yes
A1S_3218 czcB EsvF1 RND divalent metal cation efflux membrane fusion protein ABAYE0270,ABSDF0264,ACIAD3376 No No
A1S_3290 - EsvF2 putative transcriptional regulator ABAYE0200,ABSDF3398,ACIAD3452 No No
A1S_0378 etfD EsvG electron transfer flavoprotein-ubiquinone oxidoreductase ABAYE3397,ABSDF3133,ACIAD3259 No No
A1S_2262 rpoH EsvH sigma H (sigma 32) factor of RNA polymerase ABAYE1217,ABSDF1264,ACIAD1311 Yes Yes
A1S_2037 - EsvI putative transcriptional regulator No Homolog No Homolog
A1S_3329 - EsvJ conserved hypothetical protein ABAYE0156,ABSDF3464,ACIAD3508 No No
A1S_1586 - EsvK1 putative phage endonuclease No Homolog No Homolog
A1S_1587 - EsvK2 putative phage Terminase No Homolog No Homolog
A1S_0310 uvrC EsvL excinuclease ABC subunit C ABAYE3465,ABSDF3216,ACIAD0340 No No

Automatic functional annotation was first generated using our annotation pipeline [71] subsequently reviewed by human expert.

a

taken from [64],

b

taken from [36],

c

data from E. coli chromosome (PEC) database (http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp).