Table 3. Functional annotation proposed for 16 Esv-mutants published by smith and colleagues [64].
Gene labela | Gene Name | Esv-mutant Namea | Annotation | Putative Ortholog | Essential in A. baylyi ADP1b | Essential in E. coli c |
A1S_3223 | - | EsvA | putative transcriptional regulator | No Homolog | No Homolog | |
A1S_1232 | - | EsvB | putative transcriptional regulator | ABAYE2526 | No Homolog | No Homolog |
A1S_1012 | ureA | EsvC | urease gamma subunit | ABAYE2778,ABSDF2377,ACIAD1089 | No | No |
A1S_2447 | pstC | EsvD | high-affinity phosphate transport protein | ABAYE1033,ABSDF1101,ACIAD1213 | No | No |
A1S_2313 | queF | EsvE1 | 7-cyano-7-deazaguanine reductase | ABAYE1164,ABSDF1213,ACIAD2261 | No | No |
A1S_2314 | - | EsvE2 | conserved hypothetical protein | ABAYE1163,ABSDF1212,ACIAD2262 | No | No |
A1S_2315 | rodA | EsvE3 | rod shape-determining protein | ABAYE1162,ABSDF1211,ACIAD2263 | No | Yes |
A1S_3218 | czcB | EsvF1 | RND divalent metal cation efflux membrane fusion protein | ABAYE0270,ABSDF0264,ACIAD3376 | No | No |
A1S_3290 | - | EsvF2 | putative transcriptional regulator | ABAYE0200,ABSDF3398,ACIAD3452 | No | No |
A1S_0378 | etfD | EsvG | electron transfer flavoprotein-ubiquinone oxidoreductase | ABAYE3397,ABSDF3133,ACIAD3259 | No | No |
A1S_2262 | rpoH | EsvH | sigma H (sigma 32) factor of RNA polymerase | ABAYE1217,ABSDF1264,ACIAD1311 | Yes | Yes |
A1S_2037 | - | EsvI | putative transcriptional regulator | No Homolog | No Homolog | |
A1S_3329 | - | EsvJ | conserved hypothetical protein | ABAYE0156,ABSDF3464,ACIAD3508 | No | No |
A1S_1586 | - | EsvK1 | putative phage endonuclease | No Homolog | No Homolog | |
A1S_1587 | - | EsvK2 | putative phage Terminase | No Homolog | No Homolog | |
A1S_0310 | uvrC | EsvL | excinuclease ABC subunit C | ABAYE3465,ABSDF3216,ACIAD0340 | No | No |
Automatic functional annotation was first generated using our annotation pipeline [71] subsequently reviewed by human expert.
taken from [64],
taken from [36],
data from E. coli chromosome (PEC) database (http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp).