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. 2005 Oct;126(4):325–337. doi: 10.1085/jgp.200509334

TABLE II.

Oligonucleotides Used in this Study

Name of DNA Oligonucleotides Restriction sites
For constructs
a) Nt2NKCC2(51–179)/pGilda forward: gg GAA TTC ggg gat gaa gct cag aaa ag EcoRIb
reverse: cc CTC GAG cca tcc aaa ctt cac aac acc XhoI
b) Ct1NKCC2(657–836)/pGilda forward: cc GAA TTC gct ctt tcc tac gtg agt gc EcoRIb
reverse: tg CTC GAG cct gtt cta atc tct cta att cc XhoI
d) Ct1NKCC2(671–836)/pGilda forward: c aat gct ctg GAA TTC acc aca gtg gaa gac EcoRIc
reverse: gtc ttc cac tgt ggt GAA TTC cag agc att g EcoRI
e) Ct1NKCC1(759–947)/pGilda forward: tc acC CCG GGa tcc tct aca caa gca XmaIb
reverse: ca tgC CAT GGt gcc agg aga ttt cta NcoI
f) Ct1NKCC1(834–926)/pGilda forward: ca GAA TTC atg tcc atc gat caa gcca EcoRIb
reverse: c ACT CGA gtc cag acc ttc ttt tag gcga BsRI
h) Ct2NKCC2(830–1099)/B42AD forward: gg GAA TTC gaa tta gag aga tta gaa cag gag EcoRIb
reverse: gg CTC GAG agt taa aat gta ttc caa tct ttc XhoI
i) Ct2NKCC2(910–1058)/B42AD forward: c att gtc ctg agc ctt CCC GGG caa gaa agg g XmaIc
reverse: c cct ttc ttg CCC GGG aag gct cag gac aat c XmaI
For sequencing
j) pGilda forward: cgt cag cag agc ttc acc att ga
k) pB42AD forward: cc agc ctc ttg ctg agt gga gat ga
reverse: gca aag tag aca agc cga caa cc
For expression studies
l) “A” exon (RT-PCR) forward: cg gga att ggt ctt gga g
reverse: cc tcc acg aac aaa ccc g
m) “F” exon (RT-PCR) forward: cg gga att ggt ctg ggc g
reverse: cc tcc tcg cac cac tcc g
n) “AF” exon (RT-PCR) forward: cg gga att ggt ctt gga g
reverse: cc tcc tcg cac cac tcc g
o) “A” oligoprobe (in situ) forward: tt ctt ctt tcc acc atg gta acc tct at
reverse: at aga ggt tac cat ggt gga aag aag aa
p) “F” oligoprobe (in situ) forward: tt ggc ctg agc gta gtt gtg aca aca ct
reverse: ag tgt tgt cac aac tac gct cag gcc aa

They are all written 5′ to 3′. Added restriction sites are designated by capital letters. Note that Ct1NKCC2(657–782)/pGilda is not shown in the list because it was produced by deleting a portion of Ct1NKCC2(657–836) between BplI, a naturally occurring restriction site in huNKCC2 and XhoI in the pGidla cloning site.

a

Primers were available from a previous study (Simard et al., 2004a).

b

Primers were used for RT-PCR.

c

Primers were used to introduce substitutions with the Quick Change Mutagenesis Kit (Stratagene).