TABLE II.
Oligonucleotides Used in this Study
Name of DNA | Oligonucleotides | Restriction sites |
---|---|---|
For constructs | ||
a) Nt2NKCC2(51–179)/pGilda | forward: gg GAA TTC ggg gat gaa gct cag aaa ag | EcoRIb |
reverse: cc CTC GAG cca tcc aaa ctt cac aac acc | XhoI | |
b) Ct1NKCC2(657–836)/pGilda | forward: cc GAA TTC gct ctt tcc tac gtg agt gc | EcoRIb |
reverse: tg CTC GAG cct gtt cta atc tct cta att cc | XhoI | |
d) Ct1NKCC2(671–836)/pGilda | forward: c aat gct ctg GAA TTC acc aca gtg gaa gac | EcoRIc |
reverse: gtc ttc cac tgt ggt GAA TTC cag agc att g | EcoRI | |
e) Ct1NKCC1(759–947)/pGilda | forward: tc acC CCG GGa tcc tct aca caa gca | XmaIb |
reverse: ca tgC CAT GGt gcc agg aga ttt cta | NcoI | |
f) Ct1NKCC1(834–926)/pGilda | forward: ca GAA TTC atg tcc atc gat caa gcca | EcoRIb |
reverse: c ACT CGA gtc cag acc ttc ttt tag gcga | BsRI | |
h) Ct2NKCC2(830–1099)/B42AD | forward: gg GAA TTC gaa tta gag aga tta gaa cag gag | EcoRIb |
reverse: gg CTC GAG agt taa aat gta ttc caa tct ttc | XhoI | |
i) Ct2NKCC2(910–1058)/B42AD | forward: c att gtc ctg agc ctt CCC GGG caa gaa agg g | XmaIc |
reverse: c cct ttc ttg CCC GGG aag gct cag gac aat c | XmaI | |
For sequencing | ||
j) pGilda | forward: cgt cag cag agc ttc acc att ga | |
k) pB42AD | forward: cc agc ctc ttg ctg agt gga gat ga | |
reverse: gca aag tag aca agc cga caa cc | ||
For expression studies | ||
l) “A” exon (RT-PCR) | forward: cg gga att ggt ctt gga g | |
reverse: cc tcc acg aac aaa ccc g | ||
m) “F” exon (RT-PCR) | forward: cg gga att ggt ctg ggc g | |
reverse: cc tcc tcg cac cac tcc g | ||
n) “AF” exon (RT-PCR) | forward: cg gga att ggt ctt gga g | |
reverse: cc tcc tcg cac cac tcc g | ||
o) “A” oligoprobe (in situ) | forward: tt ctt ctt tcc acc atg gta acc tct at | |
reverse: at aga ggt tac cat ggt gga aag aag aa | ||
p) “F” oligoprobe (in situ) | forward: tt ggc ctg agc gta gtt gtg aca aca ct | |
reverse: ag tgt tgt cac aac tac gct cag gcc aa |
They are all written 5′ to 3′. Added restriction sites are designated by capital letters. Note that Ct1NKCC2(657–782)/pGilda is not shown in the list because it was produced by deleting a portion of Ct1NKCC2(657–836) between BplI, a naturally occurring restriction site in huNKCC2 and XhoI in the pGidla cloning site.
Primers were available from a previous study (Simard et al., 2004a).
Primers were used for RT-PCR.
Primers were used to introduce substitutions with the Quick Change Mutagenesis Kit (Stratagene).