Table 5.
Namea | Type PD | Ori PD | Ori | Sim | Name | Type PD | Ori PD | Ori | Sim |
---|---|---|---|---|---|---|---|---|---|
P1.1 | P | HSPA5 | HSPA51 | 90 | P7.2 | P | HSPA8 | HSPA81 | 71 |
P1.2 | P | - | HSPA81 | 88 | F7 | - | - | HSPA82 | 46 |
P2.1 | P | HSPA8 | HSPA81 | 68 | P8 | D | - | HSPA81 | 76 |
P2.2 | P | - | HSPA9B1 | 83 | F8.1 | A | - | HSPA82 | 46 |
P2.3 | A | - | HSPA82 | 27 | F8.2 | - | - | HSPA82 | 33 |
P3.1 | P | - | HSPA81 | 87 | P9 | D | - | HSPA82 | 31 |
P3.2 | A | HSPA6 | HSPA81 | 74 | P10 | - | - | HSPA82 | 23 |
P4 | D | - | HSPA82 | 30 | P12.1 | D | HSPA8 | HSPA81 | 88 |
P5 | P | HSPA8 | HSPA81 | 73 | P12.2 | D | HSPA8 | HSPA81 | 69 |
F5 | - | - | HSPA82 | 70 | F13 | A | - | HSPA82 | 30 |
F6.1 | D | - | HSPA82 | 36 | F18.1 | A | - | HSPA9B2 | 87 |
F6.2 | - | - | HSPA82 | 27 | F18.2 | - | - | HSPA82 | 51 |
F6.3 | A | - | HSPA82 | 87 | PX.1 | P | - | HSPA81 | 79 |
F6.4 | - | - | HSPA82 | 30 | PX.2 | D | HSPA6 | HSPA82 | 73 |
P7.1 | P | HSPA8 | HSPA81 | 90 | PX.3 | P | HSPA8 | HSPA81 | 83 |
aAbbreviations and symbols: pseudogenes with a predicted pseudocoding region ≥ 300 aa are called P, and those shorter than 300 aa are called F (fragment); PD, Pseudogene Database [19]; Type PD, predicted pseudogene type as per the Pseudogene Database; Ori PD, pseudogene origin as per the Pseudogene Database; Ori, pseudogene origin determined in this work, based on phylogenetic-tree branching (1 superscript) and based on similarity with the closest sequence (2 superscript); Sim, percent similarity (identities plus conservative substitutions of the predicted pseudoprotein); P, processed (retrotranscribed); A, ambiguous; D, duplicated.