Table 2.
Hydrolases with signal peptides in one or more strains
| Gene present in three strains | CcI3 gi | ACN gi | EAN gi | |
| Polysaccharolytic | Glycoside hydrolase, family 16 | 86742522 | 111222085 | 158319021† |
| Esterolytic/Lipolytic | Patatin | 86739488 | 111220771‡,111222061† | 158317574, 158312853 |
| Poly(3-hydroxybutyrate) depolymerase-like* | 86738795 | 111219601† | 158312237, 158318953 | |
| Poly(3-hydroxybutyrate) depolymerase-like* | 86743135 | 111224988 | 158313427, 158312582 | |
| Poly(3-hydroxybutyrate) depolymerase-like* | 86739947 | 111221400† | 158314094 | |
| Poly(3-hydroxybutyrate) depolymerase-like* | 86742257 | 111225134† | 158313019† | |
| Putative esterase | 86741433 | 111223634†, 111224716† | 158313383, 158315460 | |
| Secretory lipase* | 86738753 | 111219534‡, 111224342 | 158311883† | |
| Proteolytic | Metalloprotease-like protein | 86741105 | 111223246† | 158315133 |
| Peptidase M16-like | 86742474 | 111225385† | 158312786† | |
| Peptidase M22, glycoprotease | 86739340† | 111220592 | 158317749† | |
| Peptidase M23B | 86742263† | 111225140 | 158313012 | |
| Peptidase S1 and S6, chymotrypsin/Hap | 86738792 | 111219598 | 158318956† | |
| Peptidase S1 and S6, chymotrypsin/Hap | 86740691 | 111223367‡ | 158318071 | |
| Peptidase S8 and S53 subtilisin kexin sedolisin | 86742624 | 111225604 | 158312643 | |
| Peptidase S15 | 86742910† | 111224424† | 158315881 | |
| Peptidase S16 lon domain protein | 86742463 | 111225373 | 158312797 | |
| Putative peptidase domain | 86742587† | 111225562 | 158312677 | |
| Hypothetical | Alpha/beta hydrolase fold | 86739338 | 111220590† | 158317752 |
| Alpha/beta hydrolase fold | 86742456 | 111225365† | 158312806† | |
| Alpha/beta hydrolase fold | 86741553 | 111223803 | 158313859† | |
| Hypothetical protein; putative glycosidase* | 86742141 | 111222591 | 158317255 | |
| Hypothetical protein; putative glycosidase* | 86739771 | 111221236 | 158312651† | |
| Hypothetical protein; putative lipase | 86742918 | 111225845 | 158318206 | |
| Hypothetical protein; putative GDSL lipase | 86743055† | 111226008‡ | 158312060 | |
| Hypothetical protein; putative xylanase | 86741387 | 111220334 | 158314619 | |
| Gene present in two strains | ||||
| Polysaccharolytic | Cellulase* | x | 111224344†, 111224345† | 158313493†, 158318914 |
| Glycoside hydrolase, family 3, N-terminal | x | 111220352 | 158317032 | |
| Glucan endo-1,3-beta-D-glucosidase | x | 111221161 | 158318718 | |
| Esterolytic/Lipolytic | Esterase | x | 111221893 | 158313421† |
| Feruloyl esterase* | x | 111221879 | 158315070 | |
| Lipase class 2 | 86739361† | x | 158312565 | |
| Putative carboxylesterase/lipase | x | 111221691 | 158315258† | |
| Putative lipase | x | 111223894, 111223109 | 158314118† | |
| Proteolytic | Peptidase S8 and S53, subtilisin | x | 111224419 | 158314198 |
| Putative protease | 86741028 | x | 158315902 | |
| Gene present in one strain | ||||
| Polysaccharolytic | Arabinogalactan endo-1,4-beta-galactosidase | x | x | 158314089 |
| Glycoside hydrolase, family 26 | 86741945 | x | x | |
| Glycoside hydrolase, family 32 | x | x | 158318776 | |
| Levanase | x | x | 158318763 | |
| Putative glycosidase | x | 111223066 | x | |
| Putative xylanase | x | 111222228 | x | |
| Esterolytic/Lipolytic | Lipolytic enzyme, G-D-S-L | x | 111222700 | x |
| Phospholipase A2 | x | x | 158315136 | |
| Hypothetical | Alpha/beta hydrolase fold | 86741921 | x | x |
* Phylogenetic trees shown in Figure 3. For hypothetical glycosidases, Figure 3(E) shows addtional homologs not listed here.
† Not predicted to contain a signal peptide by SignalP or TATFIND 1.4
‡ Signal peptide predicted after manual inspection/re-annotation of start site region (see Methods)