Table 2. Primers used for GMSA and site-specific mutagenesis of the TIS.
Name, sequence and end-points of the oligonucleotides are indicated. Base substitutions are shown in bold. The nucleotide sequences of the sense strands are given.
| Name | Sequence | Position |
|---|---|---|
| TIS | 5′-GCCGCCCTGGGCAGGGCCTGCCGCTGCGGCTG-3′ | −12 to +20 |
| TIS-1 | 5′-GCCGCCCTGGGCAGG-3′ | −12 to +3 |
| TIS-2 | 5′-GCCTGCCGCTGCGGCTG-3′ | +4 to +20 |
| TIS-3 | 5′-GGCAGGGCCTGCCGC-3′ | −3 to +12 |
| TIS-4 | 5′-CCCTGGGCAGGGCCTGCCGC-3′ | −8 to +12 |
| TIS-m1 | 5′-CCCTGGGTTCGGCCTGCCGC-3′ | −10 to +12 |
| TIS-m2 | 5′-CCCTGGGCAGGGCTTTCCGC-3′ | −6 to +18 |
| TIS-m3 | 5′-CTTTGGGCAGGGCCTGCCGC-3′ | −8 to +12 |
| m-TIS #1 | 5′-GCCGCCCTGGGTTCGGCCTGCCGC-3′ | −12 to +12 |
| m-TIS #2 | 5′-CTGGGCAGGGCTTTCCGCTGCGGC-3′ | −6 to +18 |