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. 1998 Jun 9;95(12):6897–6902. doi: 10.1073/pnas.95.12.6897

Figure 3.

Figure 3

Multiple sequence alignment of the second conserved domain in rt by using pileup (32). copia/Ty1 consensus positions are highlighted. Amino acids identical to consensus are highlighted in black; amino acids similar to consensus are highlighted in gray. Opie-2 (18); Art1 (C. Herve, unpublished data, GenBank accession no. Y08010); 1731 (43); Copia (44); Tnt1 (45); Tto1 (46); Hopscotch (17); Tgmr (47); Tst1 (48); Ty1 (49); Ty3 (50); Del (51); Gypsy (21); FIV (52); HIV1 (53). A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly; H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gln; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; Y, Tyr.