Table 4.

Comparison of association tests (sample A)

Combined metrics		PC1	PC2	MsSNP		Composite likelihood		Difference*	SNPs†
Rank	χ22			Rank	χ22	Rank	χ22
1	17.18	11.17	1.37	2	22.19	1	16.30	0.00	75
2	15.80	8.37	1.06	7	17.18	17	12.67	0.04	60
3	14.99	8.19	0.21	9	15.53	7	13.64	0.09	37
4	14.41	7.68	0.00	12	14.37	13	13.20	0.36	55
5	13.97	7.49	−1.63	37	11.44	3	15.31	0.16	45
6	13.60	7.32	−1.51	38	11.36	4	14.87	0.23	44
7	13.29	7.15	−2.13	54	10.09	2	15.53	0.00	30
8	13.03	7.13	2.39	5	17.34	64	8.94	0.00	37
9	12.79	7.11	−0.80	23	12.16	8	13.54	0.52	32
10	12.58	6.99	−0.27	19	12.83	18	12.59	0.00	31
11	12.39	6.95	−1.05	35	11.52	6	13.68	0.24	38
13	12.05	6.66	−2.11	75	9.33	5	14.78	0.83	34
16	11.64	6.25	4.44	4	19.20	569	4.68	0.00	30
19	11.30	6.10	6.98	1	23.06	3,695	0.76	7.51	51
20	11.19	6.04	3.45	6	17.29	325	5.82	0.00	55
22	11.00	5.92	−1.92	115	8.45	9	13.43	0.11	55
23	10.91	5.84	3.16	8	16.48	307	5.94	0.00	30
29	10.45	5.33	6.56	3	21.15	4,731	0.26	1.33	30
45	9.57	4.81	−2.94	520	5.03	10	13.31	1.24	30
126	7.51	3.50	4.75	10	15.30	4,798	0.23	4.90	35

*Difference in LDU between estimates from the msSNP and composite likelihood.

^†Number of SNPs in the region.