Table 5.
Comparison of association tests (sample B)
| rs | Combined metrics |
PC1 | PC2 | msSNPs |
Composite likelihood |
Difference | SNPs | |||
|---|---|---|---|---|---|---|---|---|---|---|
| Rank | χ22 | Rank | χ22 | Rank | χ22 | |||||
| 6683968 | 1 | 16.06 | 10.29 | 3.15 | 1 | 20.91 | 8 | 12.08 | 1.14 | 30 |
| 242596 | 2 | 14.68 | 9.30 | −0.26 | 4 | 14.72 | 1 | 15.50 | 0.01 | 31 |
| 2328529 | 3 | 13.87 | 8.94 | −0.44 | 5 | 13.95 | 2 | 15.25 | 0.00 | 30 |
| 10496704 | 4 | 13.29 | 7.14 | −0.17 | 9 | 11.81 | 6 | 12.32 | 0.40 | 30 |
| 2037028 | 5 | 12.85 | 7.02 | 2.56 | 2 | 15.47 | 48 | 8.28 | 0.00 | 31 |
| 10495719 | 6 | 12.48 | 6.82 | −1.15 | 20 | 9.98 | 3 | 13.25 | 0.01 | 30 |
| 1895684 | 7 | 12.17 | 6.40 | −0.89 | 22 | 9.75 | 7 | 12.29 | 0.26 | 56 |
| 1113314 | 8 | 11.91 | 6.34 | −1.60 | 41 | 8.67 | 4 | 13.22 | 0.21 | 40 |
| 714048 | 9 | 11.67 | 6.20 | 1.62 | 6 | 13.00 | 44 | 8.45 | 0.51 | 30 |
| 6766101 | 10 | 11.46 | 6.12 | 1.46 | 7 | 12.66 | 40 | 8.56 | 0.18 | 30 |
| 1190281 | 14 | 10.79 | 5.22 | −2.51 | 167 | 5.80 | 5 | 12.91 | 1.21 | 30 |
| 240431 | 18 | 10.28 | 4.88 | −1.84 | 121 | 6.27 | 10 | 11.49 | 0.13 | 31 |
| 17190837 | 19 | 10.18 | 4.81 | 1.93 | 10 | 11.49 | 155 | 6.06 | 0.06 | 30 |
| 10513645 | 34 | 9.01 | 4.43 | −2.56 | 303 | 4.63 | 9 | 11.87 | 1.12 | 30 |
| 7748118 | 47 | 8.36 | 4.09 | 5.29 | 3 | 15.19 | 2,660 | 0.28 | 1.62 | 30 |
| 10485218 | 62 | 7.81 | 3.77 | 3.42 | 8 | 12.11 | 855 | 2.48 | 0.01 | 30 |