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. 2008 Jan 23;82(7):3204–3219. doi: 10.1128/JVI.02257-07

FIG. 3.

FIG. 3.

Phylogenetic dendrogram of VP6 at the nucleotide (nt) level (A). Bootstrap values (2,000 replicates) are shown. Designations of species of origin are as follows: Bo, bovine; Hu, human; Rh, rhesus; Eq, equine; Po, porcine; Ov, ovine; La, lapine; Si, simian; Mu, murine; Av, avian. The dashed line indicates the best option to divide the dendrogram into appropriate genotypes. The closing braces on the right side of the dendrograms depict the genotypes as they are proposed in this study. Panel B shows the identity frequency graph. Panels C, D, and E show details of the boxed region of panel B. In panel D, the identities among rotavirus strains belonging to the I2 genotype are shown. VP6 nucleotide accession numbers collected from GenBank are as follows for the indicated strains: BRV033, AF317126; B223, AF317128; WC3, AF411322; NCDV, AF317127; RRV, EF583009; OH4, D82975; PA169, EF554130; RF, K02254; Po, DQ119822; 111/05-27, EF554141; UKtc, X53667; R-22, D82977; OVR762, EF554152; B10925-97, EF554119; HP113, DQ003294; HP140, DQ003295; I321, X94618; 22R, AB040055; US6259, EF426123; US8720, EF426124; US8922, EF426132; US8635, EF426133; N26-02, DQ146686; US1205, AF079357; DRC86, DQ005121; DRC88, DQ005110; IS2, X94617; B1711, EF554086; US5139, EF426130; US8908, EF426140; TK126, AY456528; RV176-00, DQ490555; RV161-00, DQ490549; NR1, AF309652; TK119, AY456527; MG6, EF554097; AY456527; B4106, AY740737; 30/96, DQ205226; SA11-tsG, L15384; SA11-H96, DQ838650; SA11-30/19, DQ838648; SA11-5N, DQ838646; SA11-30/1A, DQ838649; SA11, AY187029; SA11-5S, DQ838647; 1076, D00325; Hun5, EF554108; FI-23, D82971; H-2, D00324; L26, DQ146695; TB-Chen, AY787645; S2, Y00437; Lp14, L11595; TUCH, AY594670; CMH222, ABC41660; T152, DQ146702; CMH134/04, DQ923800; CMH120/04, DQ923796; EO, AY947543; EMcN, AY267007; EDIM, U65988; EW, U36474; RMC321, AF531913; RMC/G60, AAT99008; RMC/G7, AY601551; RU172, DQ204741; 4F, L29184; 4S, L29186; CMP034, DQ534018; CRW-8, U82971; CN86, U10031; A411, AF317125; YM, X69487; A253, AF317122; A131, AF317124; H-1, AF242394; OSU, AF317123; HO-5, D82973; R-13, D82976; FI-14, D00323; HI-23, D82972; R-3, D82978; L338, D82974; Gottfried, D00326; CJN, AF461757; US6253, EF426131; KU, AB022768; 116E, U85998; Hu, X57943; Wa, K02086; E210, U36240; 97B53, AF260931; RMC61, AY601549; B4633-03, DQ146642; RV3, U04741; US9810, EF426127; US0408, EF426119; Dhaka12-03, DQ146664; Matlab13-03, DQ146675; Dhaka16-03, DQ492673; Dhaka25-02, DQ146653; RMC437, AY601554; US0468, EF426120; RMC/G66, AY601553; RMC100, AF531912; RMC83, AY601550; US8673, EF426135; US6097, EF426134; US9828, EF426139; US6153, EF426121; US8616, EF426138; US9951, EF426129; US9825, EF426128; US9875, EF426137; US9874, EF426136; US8960, EF426125; US8979, EF426126; US6161, EF426122; Ch-1, D82970; Ch-1, X98870; 02V0002G3, DQ096805; PO-13, D16329; 993-83, L13765; RK3, BAA22523; Ty-1, D82980; Ty-3, D82981; Ty-3, X98872.