TABLE 1.
Estimates of the evolution rate of Rice yellow mottle virus by Bayesian analysisa with different molecular clock and population genetic models
| Molecular clock model | Evolution rate (nt/site/yr) (10−4)b with the following population genetic model:
|
|||||
|---|---|---|---|---|---|---|
| Constant size
|
Bayesian skyline
|
|||||
| 95% lower | Mean | 95% upper | 95% lower | Mean | 95% upper | |
| Strict | 3.8 | 5.2 | 6.8 | 3.5 | 5.1 | 6.8 |
| Relaxed (lognormal) | 5.1 | 7.3 | 9.9 | 4.7 | 7.7 | 10 |
a
Implemented using BEAST.
b
95% lower and 95% upper, lower and upper values of the highest posterior density interval that contains 95% of the marginal posterior distribution.